CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0229g00200.t01	Wine grape	cytosol	14.99	82.64
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	79.35	79.55
CDX76575	Canola	cytosol	13.85	79.14
CDY59535	Canola	cytosol	13.85	79.14
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	42.07	78.96
Bra035923.1-P	Field mustard	cytosol	14.99	77.78
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	77.46	77.65
Bra035922.1-P	Field mustard	cytosol	16.37	76.92
Os07t0486000-02	Rice	cytosol	73.05	72.68
TraesCS2B01G198300.1	Wheat	cytosol	73.8	72.61
TraesCS2A01G171900.1	Wheat	cytosol	73.68	72.22
GSMUA_Achr8P08030_001	Banana	cytosol	26.95	71.81
EER99382	Sorghum	cytosol	72.42	71.61
HORVU2Hr1G031870.17	Barley	cytosol	73.43	70.75
Bra035921.1-P	Field mustard	cytosol	32.37	68.72
Zm00001d006382_P004	Maize	cytosol	68.64	64.5
KRH35336	Soybean	cytosol	14.61	27.29
KRH03809	Soybean	nucleus	21.79	18.37
KRH14375	Soybean	cytosol	18.26	17.86
KRH73763	Soybean	cytosol	18.14	17.78
KRG91481	Soybean	plastid	22.04	16.36
KRH39265	Soybean	mitochondrion	21.66	15.94
KRH48416	Soybean	cytosol	21.41	15.06
KRG96523	Soybean	plastid	22.17	13.83
KRG90177	Soybean	cytosol	10.58	12.46
KRH72584	Soybean	plastid	10.96	11.01
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	7.05	10.35
KRH33548	Soybean	nucleus	14.11	9.91
KRH50031	Soybean	plastid	10.71	9.3
KRH20465	Soybean	cytosol	1.76	6.9
KRG90178	Soybean	mitochondrion	3.15	5.58
KRH16964	Soybean	cytosol, nucleus	0.76	3.61
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.13	0.83
KRH33415	Soybean	cytosol, extracellular, plastid	0.13	0.81
KRG88725	Soybean	nucleus	0.13	0.35

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100815919	MapMan:13.3.6.5.1.2.1	Gene3D:3.30.420.110	Gene3D:3.40.50.300	EMBL:ACUP02006741
InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	EnsemblPlantsGene:GLYMA_11G034600
GO:GO:0000003	GO:GO:0000166	GO:GO:0000795	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0007049
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0030983	GO:GO:0051026	InterPro:IPR036678	UniProt:K7LMU8	EnsemblPlants:KRH28123	ProteinID:KRH28123
ProteinID:KRH28123.1	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190	PFAM:PF05192
PIRSF:PIRSF005813	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334
SUPFAM:SSF52540	UniParc:UPI000233CB65	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:2514862..2525673

Molecular Weight (calculated)

89035.0 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.057

Length

794 amino acids

Sequence
(BLAST)

001: MEDDGGESSS FVVGIIENRA KEVGLAAFDL RSASLHLSQY IETSSSYQNT KTLLHFYDPI VIIIPPNKLA SNSTAGVTEL VDRFYGSVKQ VMLARGCFDD
101: TKGAILIKNL AAKEPSALGL DTYYKQYYLC LAAAAATLKW TEAEKGVVVT NHSLSVTFNG SFDHMNIDST SIQNLEIIEP FHSTLLGTSN KKRSLFHMLK
201: TTKTIGGSRL LRANLLQPLK DIETINARLD CLDELMSNEQ LFFGLCQILR KFPKETDRVL CHFCFKAKKV TAEALAVDRA KKSQVLVSSV ILLKTALDAL
301: PLLSKVLKDV KSSLLSNIYK SVCENEKYDL IRKRIGEVID EDVLHARVPF VACTQQCFAV KAGIDGLLDI SRRAFCETSE AIHNLANNYR EDFKLPNLKL
401: TYKNRQGFHF VIPQKNIQGK LPSKFIQVVK HGNNIRCSSL ELASLNARNK SAAAECYTRT EVCLEELMDD IRENVSVLTL LAEVLCLLDM IVNSFAHMIS
501: TKPVDRYTRP EFTENGPLAI DSGRHPILES IHNDFVANNI FLTEASNMAI VMGPNMSGKS TYLQQVCLIV ILAQVGCYVP ARFSTVRVVD RMFTRMGAVD
601: NLESNSSTFM TEMKETAFIM QNVSQRSLIV MDELGRATSS SDGFAIAWSC CEHLLSLKTY TVFATHMENI SELVTMYPNV KILHFDVELK NNHLDFKFQL
701: KEGSKRIPHY GLLLAEVAGL PSSVVETARM ITSRISEKEV KRMEVNCLQH HSIQKAYHVA QRLLCLKYCN QDEDTIRQAL RNLKESCIKE KLLS

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.