CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90177	Soybean	cytosol	52.65	88.28
KRG90178	Soybean	mitochondrion	34.78	87.72
KRH33415	Soybean	cytosol, extracellular, plastid	8.32	76.42
VIT_05s0049g02090.t01	Wine grape	mitochondrion	70.8	69.93
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	7.43	69.42
CDX77432	Canola	mitochondrion	66.02	66.49
Bra015033.1-P	Field mustard	mitochondrion	65.93	66.4
CDY49227	Canola	mitochondrion	66.02	66.37
AT3G24320.1	Thale cress	mitochondrion	65.04	65.74
Solyc09g090870.2.1	Tomato	mitochondrion	64.6	64.2
KXG26672	Sorghum	mitochondrion, nucleus	61.24	61.18
Zm00001d025816_P002	Maize	mitochondrion, nucleus	60.8	60.16
TraesCS2D01G359500.1	Wheat	mitochondrion	60.0	60.11
TraesCS2B01G379900.1	Wheat	mitochondrion	60.0	60.11
Os04t0507000-01	Rice	mitochondrion	60.18	60.07
TraesCS2A01G362100.1	Wheat	mitochondrion, nucleus	59.91	60.02
HORVU2Hr1G087660.5	Barley	plastid	60.44	58.23
HORVU6Hr1G000990.1	Barley	cytosol	6.19	45.75
HORVU6Hr1G001030.1	Barley	cytosol	6.19	45.75
KRG88725	Soybean	nucleus	10.27	40.7
KRH35336	Soybean	cytosol	8.23	21.88
KRH14375	Soybean	cytosol	10.8	15.02
KRH73763	Soybean	cytosol	10.62	14.81
KRG91481	Soybean	plastid	13.89	14.67
KRH72584	Soybean	plastid	10.09	14.43
KRH28123	Soybean	cytosol	9.91	14.11
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	6.64	13.86
KRH03809	Soybean	nucleus	11.42	13.69
KRG96523	Soybean	plastid	15.22	13.51
KRH39265	Soybean	mitochondrion	12.3	12.88
KRH48416	Soybean	cytosol	12.48	12.49
KRH50031	Soybean	plastid	9.82	12.14
KRH20465	Soybean	cytosol	1.86	10.34
KRH16964	Soybean	cytosol, nucleus	1.5	10.24

Protein Annotations

MapMan:13.5.8.4	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	EMBL:ACUP02006525	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_N	InterPro:GIY-YIG_endonuc_sf	EnsemblPlantsGene:GLYMA_10G130700	GO:GO:0000166	GO:GO:0000404	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0030983	GO:GO:0032300	GO:GO:0043570	InterPro:IPR016151	InterPro:IPR035901
UniProt:K7LJ52	EnsemblPlants:KRH33548	ProteinID:KRH33548	ProteinID:KRH33548.1	InterPro:P-loop_NTPase	PFAM:PF00488
PFAM:PF01624	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	SMART:SM00534	SUPFAM:SSF52540
SUPFAM:SSF55271	SUPFAM:SSF82771	UniParc:UPI000294DBCD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:35333390..35376365

Molecular Weight (calculated)

126438.0 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.133

Length

1130 amino acids

Sequence
(BLAST)

0001: MYRVATRNVA VFFPRCCSLA HYTPSLFPIF TSFAPSRFLR INGCVKNVSS YTDKKVSRGS SRATKKPKIP NNVLDDKDLP HILWWKERLQ MCRKFSTVQL
0101: IERLDFSNLL GLDSNLKNGS LKEGTLNYEM LQFKSKFPRQ VLLCRVGDFY EAWGIDACVL VEYAGLNPFG GLRSDSIPRA GCPVVNLRQT LDDLTQNGFS
0201: VCIVEEVQGP TQVRSRKRRF ISGHAHPGNP YVYGLAAVDH DLNFPEPMPV VGISHSARGY CINMVLETMK TYSSEDCLTE EAVVTKLRTC QYHYLFLHTS
0301: LRRNSCGTCN WGEFGEGGLL WGECSSRHFD WFDGNPVSDL LAKVKELYSI DDEVTFRNTT VSSGHRARPL TLGTSTQIGA IPTEGIPSLL KVLLPSNCNG
0401: LPVLYIRELL LNPPSYEIAS KIQATCKLMS SVTCSIPEFT CVSSAKLVKL LEWREVNHME FCRIKNVLDE ILQMYSTSEL NEILKHLIEP TWVATGLEID
0501: FETLVAGCEI ASSKIGEIVS LDDENDQKIN SFSFIPHEFF EDMESKWKGR IKRIHIDDVF TAVEKAAEAL HIAVTEDFVP VVSRIKAIVA PLGGPKGEIS
0601: YAREQEAVWF KGKRFTPNLW AGSPGEEQIK QLRHALDSKG RKVGEEWFTT PKVEAALTRY HEANAKAKER VLEILRGLAA ELQYSINILV FSSMLLVIAK
0701: ALFAHASEGR RRRWVFPTLV ESHGFEDVKS LDKTHGMKIS GLLPYWFHIA EGVVRNDVDM QSLFLLTGPN GGGKSSFLRS ICAAALLGIC GLMVPAESAL
0801: IPYFDSITLH MKSYDSPADK KSSFQVEMSE LRSIIGGTTN RSLVLVDEIC RGTETAKGTC IAGSIIETLD GIGCLGIVST HLHGIFTLPL NKKNTVHKAM
0901: GTTSIDGQIM PTWKLTDGVC KESLAFETAK REGIPEHIVR RAEYLYQLVY AKEMLFAENF PNEEKFSTCI NVNNLNGTHL HSKRFLSGAN QMEVLREEVE
1001: RAVTVICQDH IKDLKCKKIA LELTEIKCLI IGTRELPPPS VVGSSSVYVM FRPDKKLYVG ETDDLEGRVR RHRLKEGMHD ASFLYFLVPG KSLACQFESL
1101: LINQLSGQGF QLSNIADGKH RNFGTSNLYT

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.