CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77432	Canola	mitochondrion	98.22	98.4
Bra015033.1-P	Field mustard	mitochondrion	98.04	98.22
AT3G24320.1	Thale cress	mitochondrion	90.75	91.23
KRG90178	Soybean	mitochondrion	27.49	68.97
VIT_05s0049g02090.t01	Wine grape	mitochondrion	69.75	68.53
KRH33548	Soybean	nucleus	66.37	66.02
Solyc09g090870.2.1	Tomato	mitochondrion	66.46	65.7
KRG90177	Soybean	cytosol	37.63	62.76
KXG26672	Sorghum	mitochondrion, nucleus	62.01	61.63
TraesCS2D01G359500.1	Wheat	mitochondrion	61.48	61.26
TraesCS2B01G379900.1	Wheat	mitochondrion	61.12	60.9
TraesCS2A01G362100.1	Wheat	mitochondrion, nucleus	61.03	60.82
Os04t0507000-01	Rice	mitochondrion	61.03	60.6
Zm00001d025816_P002	Maize	mitochondrion, nucleus	61.3	60.33
HORVU2Hr1G087660.5	Barley	plastid	61.21	58.65
HORVU6Hr1G001030.1	Barley	cytosol	6.23	45.75
HORVU6Hr1G000990.1	Barley	cytosol	6.23	45.75
CDY40145	Canola	cytosol, extracellular, plastid	2.4	32.14
CDX86902	Canola	cytosol	2.05	18.55
CDX95680	Canola	cytosol	2.05	17.29
CDY41773	Canola	plastid	10.59	14.86
CDY28796	Canola	plastid	10.59	14.84
CDY50199	Canola	plastid	13.52	14.14
CDX90956	Canola	plastid	16.81	14.14
CDX91808	Canola	mitochondrion, nucleus, plastid	16.55	14.08
CDX91525	Canola	plastid	10.94	13.87
CDX92716	Canola	plastid	13.43	13.83
CDY52899	Canola	nucleus	11.39	13.66
CDX76574	Canola	cytosol, peroxisome, plasma membrane	9.61	13.64
CDX82340	Canola	nucleus	11.3	13.55
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	9.25	13.23
CDY65220	Canola	cytosol	9.43	13.22
CDY47171	Canola	mitochondrion, nucleus	12.63	12.99
CDY25338	Canola	plastid	12.54	12.82
CDY19637	Canola	cytosol	9.61	12.69
CDY16386	Canola	plastid	10.68	10.16
CDY59535	Canola	cytosol	0.98	7.91
CDX76575	Canola	cytosol	0.98	7.91

Protein Annotations

MapMan:13.5.8.4	Gene3D:3.40.1170.10	Gene3D:3.40.1440.10	Gene3D:3.40.50.300	GO:A0A078IGX9	UniProt:A0A078IGX9
EnsemblPlants:CDY49227	ProteinID:CDY49227	ProteinID:CDY49227.1	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N
InterPro:GIY-YIG_endonuc_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00092608001	InterPro:IPR016151	InterPro:IPR035901
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF82
SMART:SM00534	SUPFAM:SSF52540	SUPFAM:SSF55271	SUPFAM:SSF82771	UniParc:UPI0004EEF87A	SEG:seg

Description

BnaC07g08470DDNA mismatch repair protein MSH1, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G24320) UniProtKB/Swiss-Prot;Acc:Q84LK0]

Coordinates

chrLK032819:+:6745..13240

Molecular Weight (calculated)

124220.0 Da

IEP (calculated)

7.665

GRAVY (calculated)

-0.151

Length

1124 amino acids

Sequence
(BLAST)

0001: MHWIATRNAV VSLPRWRSFA FLFRSPFRTH SSLKPSPLLL NTRYSERRYC LGDGKAVKGI TTASSKKVKT KSTDVLTDKD LSHLLWWKER LQTCKKPSTL
0101: QLIERLMYTN LLGLDPSLRN GSLKDGNLNW EMLQFKSRFP REVLLCRVGD FYEAIGIDAC ILVEYAGLNP FGGLRSDSAP KAGCPVVNLR QTLDDLTRNG
0201: YSVCIVEEVQ GPTPARSRKG RFISGHAHPG SPYVYGLVGV DHDLDFPEPM PVVGISRSAR GYCMISIFET MKAYSLDDGL TEEALVTKLR TRRCHHLFLH
0301: ASLRHNASGT CRWGEFGEGG LLWGECSGRN FEWFEGDTLS ELLLKVKDVY GLDDEVSFRN VNVPSENRPR PLHLGTATQI GALPTEGIPC LLKVLLPSTC
0401: SGLPSLYVRD LLLNPPAYDI ALKIQETCKL MSTITCSVPE FTCVSSAKLV KLLEQREANY IEFCRIKHVL DEVLHMHRHP ELVEILKLLM EPTWVATGLK
0501: IDFETFVNEC HWASDSIGEM ISLDDDESHQ NVSKCANIPN EFFYDMESSW RGRVKGIHIE EEITQVAKSA EALSLAVTED FHPIISRIKA MAASLGGSKG
0601: EIVYAKEHES VWFKGKRFTP SVWGGTAGEE QIKQLKPAFD SKGKKVGEEW FTSQKVEAAL VRLYHEATEN ANARVLELLR ELSTKLQTKI NVLVFASMLL
0701: VIAKALFSHA CEGRRRKWVF PTLVGFSTDE AANPLDGGAT RMKLTGLSPY WFDVASGTAV HNTVDMQSLF LLTGPNGGGK SSLLRSICAA ALLGICGFMV
0801: PAESAYIPHF DSIMLHMKSY DSPVDGKSSF QVEMSEIRSI VSQATSRSLV LIDEICRGTE TAKGTCIAGS VIENLDASGC LGIVSTHLHG IFDLPLTAKN
0901: VTYKAMGAQN VEGQTKPTWK LTDGVCRESL AFETAKREGV PETIIQRAEA LYISVYAKDA SFGVVRPNKT ETSSNSGREI SKPVSSERSL EKDLAKAILK
1001: ICGIKMNEPV GLECLSIGAR ELPPPSTVGS SCVYVMKRPD KRLYIGQTDD LEGRIRAHRA KEGLQGSSFL YLVVQGKSMA CQLETLLINQ LHEQGYSLAN
1101: LADGKHRNFG TSSSLTASDV VSIS

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.