CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022693.1-P	Field mustard	plastid	99.13	99.13
CDY41773	Canola	plastid	96.13	96.25
CDX86902	Canola	cytosol	13.47	87.1
AT5G54090.1	Thale cress	plastid	84.79	85.43
CDX95680	Canola	cytosol	11.6	69.92
GSMUA_Achr1P01790_001	Banana	mitochondrion	17.83	64.13
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	37.28	55.27
KRH72584	Soybean	plastid	53.87	54.68
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	51.62	50.61
Os10t0509000-01	Rice	cytosol, nucleus	32.79	48.52
Solyc03g080010.2.1	Tomato	plastid	49.88	48.43
OQU91528	Sorghum	plastid	47.38	45.73
TraesCS1B01G200700.1	Wheat	plastid	46.38	44.93
TraesCS1A01G179700.1	Wheat	plastid	46.26	44.59
TraesCS1D01G178000.1	Wheat	plastid	45.76	44.11
HORVU1Hr1G047640.7	Barley	plastid	45.89	42.15
Zm00001d013887_P002	Maize	plastid	42.77	40.21
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	15.59	39.19
KRH16964	Soybean	cytosol, nucleus	8.1	39.16
GSMUA_Achr1P01820_001	Banana	plastid	11.35	38.72
CDY40145	Canola	cytosol, extracellular, plastid	3.37	32.14
CDX91525	Canola	plastid	26.93	24.35
CDY16386	Canola	plastid	26.93	18.29
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	11.47	11.7
CDX76574	Canola	cytosol, peroxisome, plasma membrane	11.35	11.49
CDX77432	Canola	mitochondrion	15.09	10.78
CDY52899	Canola	nucleus	12.59	10.78
CDY50199	Canola	plastid	14.34	10.7
CDX82340	Canola	nucleus	12.47	10.67
CDY49227	Canola	mitochondrion	14.84	10.59
CDX92716	Canola	plastid	14.34	10.53
CDY65220	Canola	cytosol	10.47	10.47
CDY47171	Canola	mitochondrion, nucleus	13.84	10.16
CDY25338	Canola	plastid	13.72	10.0
CDY19637	Canola	cytosol	10.22	9.64
CDX91808	Canola	mitochondrion, nucleus, plastid	15.46	9.39
CDX90956	Canola	plastid	15.09	9.05
CDY59535	Canola	cytosol	0.62	3.6
CDX76575	Canola	cytosol	0.62	3.6

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078GTH1	UniProt:A0A078GTH1	EnsemblPlants:CDY28796	ProteinID:CDY28796
ProteinID:CDY28796.1	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	GO:GO:0030983
GO:GO:0045910	GO:GO:0090305	EnsemblPlantsGene:GSBRNA2T00041447001	InterPro:MutS2	InterPro:P-loop_NTPase	PFAM:PF00488
PIRSF:PIRSF005814	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF81	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0004EEAA06	SEG:seg	:	:

Description

BnaA02g09880DBnaA02g09880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTH1]

Coordinates

chrLK032226:+:296673..300573

Molecular Weight (calculated)

88438.6 Da

IEP (calculated)

9.089

GRAVY (calculated)

-0.227

Length

802 amino acids

Sequence
(BLAST)

001: MQTLSITFCN CALLVRRNSV GNRNRLNLSF ISSSSSSSSS SAPTLICRSK SKSQTDSLRV LEWDKLCDVV ASFARTSLGR QATKKKLWSL DQSFDESLKL
101: LEETEAAIKM LEHGSFCLDL SSIQISLVEL GIRNAKRKMS LRADQALEVA SLLSFFENLQ LDLKAAIKQD GDWYKRFMPL SEMIMLPVIN RSFIKLVEQI
201: IDIDGKIKDS ASSDLRLSRE RVQTVERKLQ QLLEAIVRSQ KANESVMVVA EIDGRWCIQT SSSQLTSVDG LLLSSGSGGG TASEPLAAVS MNDELQSARA
301: SVAKAEAEIL SMLTAKMQMD LDQIDDVMRY SIQLDVINAR ATYSRAYGAS HPDIYLPPED GVDSESLSAG EPSPENNLSG EESLPRKEWL LYLPRCYHPL
401: LLHQHKKRIR KTQEAVKYHK TAGTVSGVPP VPADFQISKG TRVLVITGPN TGGKTICLKS VGLAAMMAKS GLYVLASESA RLPWFDNIYA DIGDEQSLLQ
501: SLSTFSGHLK QISEIISHST SRSLVLLDEV GAGTNPLEGA ALGMAILESF AESGSLLTMA TTHHGELKML KYSNSAFENA CMEFDDLNLK PTFKILWGVP
601: GRSNAINIAE RLGLPCDIIN SARELYGSAS AEINEVILDM ERYKQDYQRL LNESRRYIRI SRELHENLLT AEKNINSHAT RERLKMRQEL IQAGSMARST
701: LRRTLQQFRA SAAQSSRTKV ATQLKTTKGG DNATRSPSMV ARRPVSDAAQ KGNTKLPQVG DSVFVSSLGK KVTVLKVEQS KKEILVQVGI MKMKVKLTEV
801: VA

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.