Factsheet for Bra022693.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28796	Canola	plastid	99.13	99.13
AT5G54090.1	Thale cress	plastid	84.79	85.43
GSMUA_Achr1P01790_001	Banana	mitochondrion	17.83	64.13
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	37.16	55.08
KRH72584	Soybean	plastid	53.74	54.56
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	51.5	50.49
Solyc03g080010.2.1	Tomato	plastid	49.88	48.43
Os10t0509000-01	Rice	cytosol, nucleus	32.67	48.34
OQU91528	Sorghum	plastid	47.26	45.61
TraesCS1B01G200700.1	Wheat	plastid	46.26	44.81
TraesCS1A01G179700.1	Wheat	plastid	46.13	44.47
TraesCS1D01G178000.1	Wheat	plastid	45.64	43.99
HORVU1Hr1G047640.7	Barley	plastid	45.89	42.15
Zm00001d013887_P002	Maize	plastid	42.64	40.09
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	15.71	39.5
KRH16964	Soybean	cytosol, nucleus	8.1	39.16
GSMUA_Achr1P01820_001	Banana	plastid	11.35	38.72
Bra022497.1-P	Field mustard	plastid	26.81	24.27
Bra028327.1-P	Field mustard	extracellular, vacuole	4.86	23.64
Bra021052.1-P	Field mustard	cytosol	11.47	11.62
Bra001709.1-P	Field mustard	nucleus	12.59	10.78
Bra015033.1-P	Field mustard	mitochondrion	14.96	10.7
Bra019156.1-P	Field mustard	plastid	14.34	10.61
Bra028373.1-P	Field mustard	mitochondrion, plastid	14.09	10.19
Bra035777.1-P	Field mustard	cytosol	10.22	9.7
Bra000896.1-P	Field mustard	plastid	15.09	9.05
Bra035922.1-P	Field mustard	cytosol	1.25	5.92
Bra035923.1-P	Field mustard	cytosol	1.12	5.88
Bra035921.1-P	Field mustard	cytosol	1.87	4.01

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra022693	EnsemblPlants:Bra022693.1	EnsemblPlants:Bra022693.1-P	ncoils:Coil
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	GO:GO:0030983	GO:GO:0045910	GO:GO:0090305
UniProt:M4E1P3	InterPro:MutS2	InterPro:P-loop_NTPase	PFAM:PF00488	PIRSF:PIRSF005814	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF81	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
UniParc:UPI0002546A2B	SEG:seg	:	:	:	:

Description

AT5G54090 (E=0.0) | DNA mismatch repair MutS family protein

Coordinates

chrA02:+:7972067..7975883

Molecular Weight (calculated)

88416.5 Da

IEP (calculated)

8.977

GRAVY (calculated)

-0.223

Length

802 amino acids

Sequence
(BLAST)

001: MQTLSITFCN CALLVRRNSV GNRNRLNLSF ISSSSSSSSS APTLICRSKS KSQTDSLRVL EWDKLCDVVA SFARTSLGRQ ATKKKLWSLD QSFDESLKLL
101: EETEAAIKML EHGSFCLDLS SIQISLVELG IRNAKRKMSL RADQALEVAS LLSFFENLQL DLKAAIKQDG DWYKRFMPLS EMIMLPVINR SFIKLVEQII
201: DVDGKIKDSA SSDLRLSRER VQTVERKLQQ LLEAIVRSQK ANESVMVVAE IDGRWCIQTS SSQLTSVDGL LLSSGSGGGT ASEPLAAVSM NDELQSARAS
301: VAKAEAEILS MLTAKMQMDL DQIDDVMKYS IQLDVINARA TYSRAYGASH PDIYLPPEDG VDSESLSAGE DSPANNFSGE EALPRKEWLL YLPRCYHPLL
401: LHQHKKRIRK TQEAVKYHKT AGTVSGVPPV PADFQISKGT RVLVITGPNT GGKTICLKSV GLAAMMAKSG LYVLASESAR LPWFDNIYAD IGDEQSLLQS
501: LSTFSGHLKQ ISEIISHSTS RSLVLLDEVG AGTNPLEGAA LGMAILESFA ESGSLLTMAT THHGELKMLK YSNSAFENAC MEFDDLNLKP TFKILWGVPG
601: RSNAINIAER LGLPCDIINS ARELYGSASA EINEVILDME RYKQDYQRLL NESRRYIRIS RELHENLLTA EKNINSHATR ERLKMRQELI QAGSMARSTL
701: RRTLQQFRAS AAQSSRTKVA TQLKTTKGGD NATRSPSMVA RRPVSEDAAQ KGNTKLPQVG DSVFVSSLGK KVTVLKVEQS KKEILVQVGI MKMKVKLTEV
801: VA

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.