Factsheet for Bra000896.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90956	Canola	plastid	99.18	99.18
AT4G02070.1	Thale cress	plastid	86.01	86.86
VIT_07s0005g01370.t01	Wine grape	plastid	63.65	65.61
KRG96523	Soybean	plastid	60.73	63.79
Solyc01g079520.2.1	Tomato	plastid	60.51	61.66
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	54.97	57.65
HORVU5Hr1G061020.11	Barley	endoplasmic reticulum, golgi, plasma membrane	43.9	56.77
TraesCS5D01G212500.1	Wheat	nucleus	46.37	54.48
Zm00001d020424_P002	Maize	nucleus, plastid	52.36	54.01
KXG35601	Sorghum	mitochondrion, nucleus, plastid	52.66	53.99
TraesCS5A01G206300.1	Wheat	mitochondrion	51.76	52.46
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	26.18	49.23
Bra028327.1-P	Field mustard	extracellular, vacuole	3.81	30.91
Bra028373.1-P	Field mustard	mitochondrion, plastid	23.86	28.76
Bra019156.1-P	Field mustard	plastid	20.49	25.28
Bra001709.1-P	Field mustard	nucleus	15.63	22.31
Bra021052.1-P	Field mustard	cytosol	12.64	21.34
Bra035777.1-P	Field mustard	cytosol	12.27	19.41
Bra015033.1-P	Field mustard	mitochondrion	14.36	17.11
Bra035923.1-P	Field mustard	cytosol	1.8	15.69
Bra035922.1-P	Field mustard	cytosol	1.94	15.38
Bra022693.1-P	Field mustard	plastid	9.05	15.09
Bra022497.1-P	Field mustard	plastid	9.27	14.0
Bra035921.1-P	Field mustard	cytosol	3.29	11.76

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.3	Gene3D:2.30.30.140	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
EnsemblPlantsGene:Bra000896	EnsemblPlants:Bra000896.1	EnsemblPlants:Bra000896.1-P	ncoils:Coil	InterPro:DNA_mismatch_repair_MSH6_C	InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006290
GO:GO:0006298	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030983	InterPro:IPR002999	InterPro:IPR016151	InterPro:IPR036678	UniProt:M4C9L7	InterPro:MutS_con_dom_sf
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05190	PFAM:PF05192
PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF31	SMART:SM00333	SMART:SM00533
SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271	SUPFAM:SSF63748
InterPro:Tudor	UniParc:UPI000254060E	SEG:seg	:	:	:

Description

AT4G02070 (E=0.0) MSH6, MSH6-1, ATMSH6 | MSH6 (MUTS HOMOLOG 6); damaged DNA binding

Coordinates

chrA03:-:13774262..13781188

Molecular Weight (calculated)

148690.0 Da

IEP (calculated)

6.496

GRAVY (calculated)

-0.524

Length

1337 amino acids

Sequence
(BLAST)

0001: MAPSRRQISG RSPLVNPQRQ ITSFFGKSAS SSSPSPSPLS NTKTPKSKPN PNSPSPSPLS NTKIPKSNSN PSSPPLSNNK LPKSNPPARS PSPGPTTPSP
0101: VHPKLKKPLL VIGQTPSPPK FTETTYGDEV VGKQVRIYWP LDKKWYDGSV TSYNKGEGKH VVEYEDGEEE SLDLGKEKIE WVVEGDSVNR FKRLRRGASA
0201: FRRVVTDEDE DVEMGNVEEE KEDKSDGDDS SDEDWGKNVG KEVCESEEDD VELDAEDDTM DEEEIVEEKD EETPSKTDSR KRKKTSEVAK PGVEKKIKTD
0301: KVTTFKGFKA SVVEPVKKIG EADKVVKSLD DNMLDGDALA RFGARESEKF RFMGIDRRDA KRRRPTDENY DPRTLYLPPD FVKRLTGGQR QWWEFKSKHM
0401: DKVLFFKMGK FYELYEMDAH VGAKELDLRY MKGEQPHCGF PEKNFSVNIE KLVQKGYRVL VVEQTETPDQ LERRRKEKGS KDKVVKREIC AVVTRGTLTD
0501: GEMVLTNPDA SYLMALTEGG ESLTDEKAEH NFGVCLVDVA TKKIILGQFK DDQDCSALSC VLSEIRPVEV IKPANALSSA TERTIVRHTR NPLVNNLVPL
0601: SEFWDAEKTI HEIGILYKGF SCQPSSAYSG EGKVLGDPPL NNESGSSCLP KMLSELANGD KDGSLALSAL GGAIYYLRQA FLDESLLRFA KFESLPYCDF
0701: SNFTVKQHMV LDAAALENLE IFENSRNGGV SGTLYAQLNQ CITASGKRLL KTWLARPLYN PELIKERQDA VAILRGENLP YSLEFRKALS RLPDMERLIA
0801: RIFSSIEASG RNGDKVVLYE DVAKKQLQEF ISTLRGCETM VEACSSLRAS LEHDNSRRLR HLLTPGQSLP NISPFIKYFK DAFDWVEAHD SGRVVPHEGA
0901: DEEYDFTCKT VKELEVSLTK HLKEQRKLLG DASIKYVTVG KDEYLLEVPE SLSGSIPQDY ELCSSKKGVF RYWTPTIKKL LKELAQAKSE KESALKSISQ
1001: RLIGRFCEHQ EEWRQLVSAT AELDVLISLA FASDSYEGVR CRPVISSSKS VDVPHLSATG LGHPVLRGDS LGRGSFVPND VKIGGAKQAS FILLTGPNMG
1101: GKSTLLRQVC LAVILSQIGA DVPAETFELL PVDRIFVRMG AKDHIMAGQS TFLTELSETA VMLSSATRNS LVVLDELGRG TATSDGQAIA ESVLEHFIDK
1201: VQCRGMFSTH YHRLSMDYQT NPQVSLCHMG CQVGEGSGGV EEVTFLYRLT PGACPKSYGV NVARLAGLPD DVLQRAVIKS QEFEGLYGKN HKKADRKMAE
1301: MIKQIISGVA SDSDTATSKH LLSELHYKAN TYLRLTN

Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)

0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN

Arabidopsis Description

MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.