Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G061020.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 85.41 | 94.0 |
| TraesCS5A01G206300.1 | Wheat | mitochondrion | 96.22 | 83.02 |
| KXG35601 | Sorghum | mitochondrion, nucleus, plastid | 76.1 | 66.41 |
| Zm00001d020424_P002 | Maize | nucleus, plastid | 74.17 | 65.12 |
| Os09t0407600-01 | Rice | mitochondrion, nucleus, plastid | 39.19 | 62.73 |
| GSMUA_Achr5P24510_001 | Banana | nucleus, plastid | 60.37 | 53.88 |
| KRG96523 | Soybean | plastid | 55.36 | 49.49 |
| VIT_07s0005g01370.t01 | Wine grape | plastid | 56.33 | 49.42 |
| Solyc01g079520.2.1 | Tomato | plastid | 55.98 | 48.55 |
| CDX91808 | Canola | mitochondrion, nucleus, plastid | 54.48 | 46.93 |
| AT4G02070.1 | Thale cress | plastid | 54.39 | 46.75 |
| CDX90956 | Canola | plastid | 54.57 | 46.45 |
| Bra000896.1-P | Field mustard | plastid | 54.48 | 46.37 |
| TraesCS2D01G352400.1 | Wheat | cytosol | 20.74 | 24.23 |
| TraesCS3D01G119400.1 | Wheat | mitochondrion | 25.4 | 23.65 |
| TraesCS1D01G316200.1 | Wheat | cytosol | 14.76 | 20.56 |
| TraesCS1D01G131600.3 | Wheat | nucleus | 16.96 | 20.49 |
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 14.24 | 14.36 |
| TraesCS2D01G565200.1 | Wheat | plastid | 9.75 | 12.1 |
| TraesCS1D01G178000.1 | Wheat | plastid | 8.52 | 11.66 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:14.7.1.3 | Gene3D:3.30.420.110 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DNA_mismatch_repair_MSH6_C | InterPro:DNA_mismatch_repair_MutS-lik_N | InterPro:DNA_mismatch_repair_MutS/MSH | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N | InterPro:DNA_mismatch_repair_MutS_clamp |
| InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | InterPro:DNA_mmatch_repair_MutS_con_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 | InterPro:IPR016151 |
| InterPro:IPR036678 | InterPro:MutS_con_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF01624 | PFAM:PF05188 |
| PFAM:PF05190 | PFAM:PF05192 | PIRSF:PIRSF037677 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF31 | SMART:SM00533 |
| SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | SUPFAM:SSF53150 | SUPFAM:SSF55271 | EnsemblPlantsGene:TraesCS5D01G212500 |
| EnsemblPlants:TraesCS5D01G212500.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:321718897..321728942
Molecular Weight (calculated)
125635.0 Da
IEP (calculated)
5.777
GRAVY (calculated)
-0.331
Length
1138 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSDTAKAKSP SVQEDEETGD STEDEDWKKG AAPEDDSEEE VELDDEEEEV VAVSSRKGKS RNSLSTSASV STLRSTSGLG SASSGSTLSK KRKQVDVGAL
0101: DCAKKFSFQL ANTPEKAEMK VPPSCDRRER ILENAHLALT GDLSERFGSR QTEKFTFLGQ GRKDAKGRRP GDPAYDPRTL FLPSQFLKNL TGGQRQWWEF
0201: KSQHMDKVLF FKMGKFYELY EMDAHVGAKE LDLQYMKGDQ PHCGFPEKNL AVNLEKLAQK GYRVLVVEQT ETPDQLELRR RETGTKDKVV RREICAMVTK
0301: GTLTEGESLL ANPDPSYILS VAESYPCSST NSQDGHTIGV CIIDVSTSKF IIGQFQDDPE RHVLCSILSE IRPVEIIKPA KMLSAETERA LKNNTRDPLI
0401: NGLLPSTEFW DAEKTIHAIE QYYSSSDNLT ASRNTVGVQN NVGCLPDLLS ELIEAGDRVY ALSALGGSLF YLKQVLLDDK LLPCAEFEPL TCSGLINNMR
0501: KHMILDAAAL ENLEILENAT GGLSGTLYEQ LNHCVTGFGK RMLKRWIVRP LYDCKAIQQR QGAIAIFKGV GHECAMQFRK DLCRLPDMER LLAHLFSRCG
0601: ENGRSKSVVL YEDTAKRLLK QFTAALRGCQ QMFQACSSIR VLTGTEGSSL LNDLLSPGKG LPDVSSILDY FRDAFDWSEA DHNGRIIPLE GCDPEYDATS
0701: CAIEEIESSL QEYLKEQRKL LKDSSVKYVN VGKDTYLIEV SESLRGSVPN DYELQSTKKG VCRYWTPEVK QLISELSKVA TDKESILKGI LQKLIHLFIE
0801: HHSKWRQLVS VAAEIDVLVS LSIAGDYFEG PTCCPTIREL CGPDDTPTFH ARNLGHPIIR SDSLGKGSFV PNNINMGGPG NASFIVLTGP NMGGKSTLLR
0901: QVCLTIILAQ IGADVPAENL ELSLVDRIFV RMGARDHIMA GKSTFLVELM ETASVLSSAT KNSLVALDEL GRGTSTSDGQ AIAASVLDYL VQRVQCLGLF
1001: STHYHKLAVE HEDDKVSLCH MACQVGTGEG GLEEVTFLYR LTAGSCPKSY GVNVARLAGI PASVLQRANE KSIDFEASYG KRCCATKDKA ICTQEDNFTT
1101: IKDLFRVVKA GNHQGDQATS LSRIREVQMR ARAQAMEA
0101: DCAKKFSFQL ANTPEKAEMK VPPSCDRRER ILENAHLALT GDLSERFGSR QTEKFTFLGQ GRKDAKGRRP GDPAYDPRTL FLPSQFLKNL TGGQRQWWEF
0201: KSQHMDKVLF FKMGKFYELY EMDAHVGAKE LDLQYMKGDQ PHCGFPEKNL AVNLEKLAQK GYRVLVVEQT ETPDQLELRR RETGTKDKVV RREICAMVTK
0301: GTLTEGESLL ANPDPSYILS VAESYPCSST NSQDGHTIGV CIIDVSTSKF IIGQFQDDPE RHVLCSILSE IRPVEIIKPA KMLSAETERA LKNNTRDPLI
0401: NGLLPSTEFW DAEKTIHAIE QYYSSSDNLT ASRNTVGVQN NVGCLPDLLS ELIEAGDRVY ALSALGGSLF YLKQVLLDDK LLPCAEFEPL TCSGLINNMR
0501: KHMILDAAAL ENLEILENAT GGLSGTLYEQ LNHCVTGFGK RMLKRWIVRP LYDCKAIQQR QGAIAIFKGV GHECAMQFRK DLCRLPDMER LLAHLFSRCG
0601: ENGRSKSVVL YEDTAKRLLK QFTAALRGCQ QMFQACSSIR VLTGTEGSSL LNDLLSPGKG LPDVSSILDY FRDAFDWSEA DHNGRIIPLE GCDPEYDATS
0701: CAIEEIESSL QEYLKEQRKL LKDSSVKYVN VGKDTYLIEV SESLRGSVPN DYELQSTKKG VCRYWTPEVK QLISELSKVA TDKESILKGI LQKLIHLFIE
0801: HHSKWRQLVS VAAEIDVLVS LSIAGDYFEG PTCCPTIREL CGPDDTPTFH ARNLGHPIIR SDSLGKGSFV PNNINMGGPG NASFIVLTGP NMGGKSTLLR
0901: QVCLTIILAQ IGADVPAENL ELSLVDRIFV RMGARDHIMA GKSTFLVELM ETASVLSSAT KNSLVALDEL GRGTSTSDGQ AIAASVLDYL VQRVQCLGLF
1001: STHYHKLAVE HEDDKVSLCH MACQVGTGEG GLEEVTFLYR LTAGSCPKSY GVNVARLAGI PASVLQRANE KSIDFEASYG KRCCATKDKA ICTQEDNFTT
1101: IKDLFRVVKA GNHQGDQATS LSRIREVQMR ARAQAMEA
0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN
Arabidopsis Description
MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.