Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G085940.21 | Barley | cytosol | 83.57 | 93.24 |
| TraesCS2B01G372400.1 | Wheat | mitochondrion, plastid | 97.23 | 89.93 |
| TraesCS2B01G372300.1 | Wheat | plastid | 97.23 | 85.78 |
| EES11671 | Sorghum | plastid | 80.8 | 71.55 |
| Zm00001d026647_P005 | Maize | nucleus | 79.06 | 57.55 |
| KRH35336 | Soybean | cytosol | 24.23 | 55.53 |
| VIT_16s0100g01310.t01 | Wine grape | plastid | 58.83 | 51.58 |
| KRG91481 | Soybean | plastid | 55.75 | 50.75 |
| AT4G25540.1 | Thale cress | nucleus, plastid | 55.13 | 49.68 |
| Solyc03g025890.1.1 | Tomato | nucleus | 56.37 | 49.15 |
| CDY50199 | Canola | plastid | 54.0 | 48.93 |
| CDX92716 | Canola | plastid | 54.62 | 48.72 |
| Bra019156.1-P | Field mustard | plastid | 54.0 | 48.52 |
| VIT_00s0485g00020.t01 | Wine grape | mitochondrion, plastid | 17.97 | 37.23 |
| VIT_00s0388g00030.t01 | Wine grape | plastid | 18.17 | 36.12 |
| TraesCS1D01G131600.3 | Wheat | nucleus | 20.53 | 21.23 |
| TraesCS5D01G212500.1 | Wheat | nucleus | 24.23 | 20.74 |
| TraesCS1D01G316200.1 | Wheat | cytosol | 17.35 | 20.69 |
| TraesCS3D01G119400.1 | Wheat | mitochondrion | 20.12 | 16.04 |
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 15.09 | 13.03 |
| TraesCS1D01G178000.1 | Wheat | plastid | 10.37 | 12.14 |
| TraesCS2D01G565200.1 | Wheat | plastid | 10.16 | 10.8 |
| EES13125 | Sorghum | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:14.7.1.2 | Gene3D:3.30.420.110 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_MutS-lik_N |
| InterPro:DNA_mismatch_repair_MutS/MSH | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N | InterPro:DNA_mismatch_repair_MutS_clamp | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf |
| InterPro:DNA_mmatch_repair_MutS_con_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 | InterPro:IPR016151 | InterPro:IPR036678 |
| InterPro:MutS_con_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF01624 | PFAM:PF05188 | PFAM:PF05190 |
| PFAM:PF05192 | PIRSF:PIRSF037677 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF122 | SMART:SM00533 |
| SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | SUPFAM:SSF55271 | EnsemblPlantsGene:TraesCS2D01G352400 | EnsemblPlants:TraesCS2D01G352400.1 |
| TIGR:cd03287 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:450528032..450534138
Molecular Weight (calculated)
106345.0 Da
IEP (calculated)
6.126
GRAVY (calculated)
-0.068
Length
974 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEVGYRFRF FGEDAAVAAS VLGIVAHPDR SFLTASVPTF RLGFHVRRLV DAGHKVGVVR QTETAAIKAA AAARGGGGAA PFARELSAVY TRATIEAGAG
101: EMEGGGAPEE GSRYLVCVVD KEVDAVGREG FEVKVGVVAI EVSTGEVVHG ELMDGAARSG LEAVLLGLAP VEVILGTPLS FSTEKLMRAY AGPASNVRVE
201: CTSRNCFSEG GALAELMSLF EKSEVNSPTI ENDKQMMEIN EEDNNLRGME GVMAMPELVA QAMALSVHYL KGFGMERLIC FGSSFRPFTA NTEMSLSANA
301: LQQLEVLKNN SDGSIEGSLF QTMNNTCTAF GSRLFRHWLT HPLCDRNLIC ARHDAISEIS ESMGSRQDSV SIRQDEGDGC CAASARSDLS TILSSVLTML
401: GRSLDSQRGI TRIFHCKATA KEFVGVIQAI LTAGKELRKL VLEDTDNVSS QHRTVHSSLL RRLISTASSS AVLANAVKLL SCLDKDAADQ GDMINLFISS
501: VDQFPEVAEG HVTVQMAKQK LDLLIVEYRK QLGMRSLEYK TVSGTAYLIE LPVDRRVPSN WMKVNSTKKT IRYHTPEVLK NLDNLLLAKE ELAVICRKTW
601: HKFLMDFGKY YAQFQASVES LAALDCLYSL ATLAKQNNYV QPNFVPENEA SQIHIKDGRH PVLESLLGDN FVPNDTDLHA DGQYCQIVTG PNMGGKSCYI
701: RQVALITIMA QVGSFVPASS AILHVVDGIY TRMGASDSIQ QGTSTFYEEM NEASNILQNC SSRSLVIIDE LGRGTSTHDG VAIAYATLHY LLKNKKCIVI
801: FVTHYPKILD IQSEFEGSVG AYHVSYLSTR KLLQISDEKM GISTETEDLG EITFLYKLVA GASDRSFGLN VALLAQLPLR CIKRASVMAA KLQEEMSKRD
901: ENKLLRLMDE PSRDGPWESS PEVGLLCAEP HQGLMEACRR ILRDMRSAQS NNDVTNTLSC LKSAQEIASK MIKG
101: EMEGGGAPEE GSRYLVCVVD KEVDAVGREG FEVKVGVVAI EVSTGEVVHG ELMDGAARSG LEAVLLGLAP VEVILGTPLS FSTEKLMRAY AGPASNVRVE
201: CTSRNCFSEG GALAELMSLF EKSEVNSPTI ENDKQMMEIN EEDNNLRGME GVMAMPELVA QAMALSVHYL KGFGMERLIC FGSSFRPFTA NTEMSLSANA
301: LQQLEVLKNN SDGSIEGSLF QTMNNTCTAF GSRLFRHWLT HPLCDRNLIC ARHDAISEIS ESMGSRQDSV SIRQDEGDGC CAASARSDLS TILSSVLTML
401: GRSLDSQRGI TRIFHCKATA KEFVGVIQAI LTAGKELRKL VLEDTDNVSS QHRTVHSSLL RRLISTASSS AVLANAVKLL SCLDKDAADQ GDMINLFISS
501: VDQFPEVAEG HVTVQMAKQK LDLLIVEYRK QLGMRSLEYK TVSGTAYLIE LPVDRRVPSN WMKVNSTKKT IRYHTPEVLK NLDNLLLAKE ELAVICRKTW
601: HKFLMDFGKY YAQFQASVES LAALDCLYSL ATLAKQNNYV QPNFVPENEA SQIHIKDGRH PVLESLLGDN FVPNDTDLHA DGQYCQIVTG PNMGGKSCYI
701: RQVALITIMA QVGSFVPASS AILHVVDGIY TRMGASDSIQ QGTSTFYEEM NEASNILQNC SSRSLVIIDE LGRGTSTHDG VAIAYATLHY LLKNKKCIVI
801: FVTHYPKILD IQSEFEGSVG AYHVSYLSTR KLLQISDEKM GISTETEDLG EITFLYKLVA GASDRSFGLN VALLAQLPLR CIKRASVMAA KLQEEMSKRD
901: ENKLLRLMDE PSRDGPWESS PEVGLLCAEP HQGLMEACRR ILRDMRSAQS NNDVTNTLSC LKSAQEIASK MIKG
0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
Arabidopsis Description
MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.