Factsheet for VIT_16s0100g01310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	37.17	87.87
VIT_00s0388g00030.t01	Wine grape	plastid	37.71	85.51
KRG91481	Soybean	plastid	67.15	69.72
KRH35336	Soybean	cytosol	26.55	69.41
Solyc03g025890.1.1	Tomato	nucleus	66.52	66.16
AT4G25540.1	Thale cress	nucleus, plastid	63.55	65.31
CDY50199	Canola	plastid	62.83	64.93
CDX92716	Canola	plastid	63.55	64.65
Bra019156.1-P	Field mustard	plastid	63.01	64.58
TraesCS2D01G352400.1	Wheat	cytosol	51.58	58.83
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	55.0	58.02
HORVU2Hr1G085940.21	Barley	cytosol	45.18	57.5
TraesCS2B01G372300.1	Wheat	plastid	56.08	56.43
EES11671	Sorghum	plastid	55.36	55.91
Zm00001d026647_P005	Maize	nucleus	55.45	46.04
VIT_17s0000g04170.t01	Wine grape	cytosol	20.34	23.92
VIT_07s0005g01370.t01	Wine grape	plastid	26.37	22.59
VIT_19s0090g00670.t01	Wine grape	cytosol	15.03	21.06
VIT_11s0016g04090.t01	Wine grape	nucleus	20.79	20.55
VIT_00s0229g00210.t01	Wine grape	endoplasmic reticulum, golgi	4.05	17.31
VIT_05s0049g02090.t01	Wine grape	mitochondrion	15.39	14.95
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	10.08	13.69
VIT_00s0229g00200.t01	Wine grape	cytosol	1.71	13.19
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100266933	wikigene:100266933	MapMan:14.7.1.2	Gene3D:3.30.420.110	Gene3D:3.40.1170.10
Gene3D:3.40.50.300	ProteinID:CCB56414	ProteinID:CCB56414.1	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	UniProt:F6HP08	EMBL:FN596000
GO:GO:0000166	GO:GO:0000404	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0032300
GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678	EntrezGene:LOC100266933	wikigene:LOC100266933	InterPro:MutS_con_dom_sf
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05192	PIRSF:PIRSF037677
ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF122	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334
SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271	UniParc:UPI0002108280	ArrayExpress:VIT_16s0100g01310	EnsemblPlantsGene:VIT_16s0100g01310
EnsemblPlants:VIT_16s0100g01310.t01	RefSeq:XP_002263286	RefSeq:XP_002263286.2	RefSeq:XP_010662491.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:16825733..16834775

Molecular Weight (calculated)

121532.0 Da

IEP (calculated)

7.106

GRAVY (calculated)

-0.158

Length

1111 amino acids

Sequence
(BLAST)

0001: MGKQKQQVIS RFFAPKPKAP SSSSSSIPSS PSPSPSPSSL PNPPTPPPKI STTVTFSPSK RLPSSHVSPS TKPPKAPKIS HPIDPSLHQK FVQKLLEPSS
0101: STPTKLPLPT TKYTPLEQQV VDLKQKYPDV LLMVEVGYRY RFFGEDAEIA ARVLGIYAHV DHNFLTASIP TFRLNVHVRR LVSAGFKVGV VKQTETAAIK
0201: AHGSNKLGPF CRGLSALYTK ATLEAAEEVG GGEEECGSYN NYLVCVVEKG ISVENSKDCG VGGGFDVRIG IVAVEVSTGD VVHGEFNDNF MRAGLEAVIL
0301: SMSPAELLLG YPLSKQTEKL LLAYAGPASN VRVERTSRDC FSDGGALAEV MSLYENLSEN SRADHQVDNT EVMEQENHCL AIEGIMSMPD LAVQALALTI
0401: RHLKQFGLER ILCMGASFRP FSSNMEMTLS ANALQQLEVL NNHSDGSESG SLLHTMNHTL TIFGSRLLRH WVSHPLCDSN MISARLDAVS EIVMSMGSCK
0501: ASQNFGGIDE GDSDVTYVQP EVNYLLSSVL TTLGRSPDIQ RGLTRIFHRT ATASEFISVT QAILFAGKQL QRLHIEEKDV DEKGQSRSVR SVLLRKLILT
0601: ASSSGIIGNA AKLLSTLNKE AADKGDLPNL FIISSGQFPE VAKARSLVQS AKEKLDLLIG LYRKQLRMNN LEFMSVSGTT HLIELPVDVK VPSNWVKVNS
0701: TKKTVRYHPP EVLSALDQLS LANEELMIAC RGAWDSFLRA FDKYFSEFQA AVQALATLDC LHSLAILSRN KNYVRPVFVG DSEPVQMHIC SGRHPVLETV
0801: LQDNFVPNDT NLHADGEYCE IVTGPNMGGK SCYIRQVALI AIMAQVGSFV PASSAKLCVL DGIHTRMGSS DSIQQGRSTF LEELSEASHI IHNCTSRSLV
0901: IIDELGRGTS THDGVAIAYA TLHYLLEHKR CMVLFVTHYP KIVDVKNEFP GSVGAYHVSY MMSQRAMDMD TDTDKTDSKS DKNAQTMDHE DVTYLYKLVP
1001: GVSERSFGFK VAQLAQLPSS CIRRANVMAA ELEAMIVSRV KNSSAQKTLQ GSQQSISIQS GCSRAEQIGL EEDACREFFL DLKSALGNAD PERSLQFLKH
1101: ARSIAKELIG R

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.