Factsheet for VIT_00s0485g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0388g00030.t01	Wine grape	plastid	97.45	93.47
VIT_16s0100g01310.t01	Wine grape	plastid	87.87	37.17
KRG91481	Soybean	plastid	59.36	26.07
Solyc03g025890.1.1	Tomato	nucleus	61.49	25.87
AT4G25540.1	Thale cress	nucleus, plastid	58.51	25.44
CDY50199	Canola	plastid	57.45	25.12
Bra019156.1-P	Field mustard	plastid	57.66	25.0
CDX92716	Canola	plastid	57.45	24.73
EES11671	Sorghum	plastid	48.09	20.55
TraesCS2B01G372300.1	Wheat	plastid	47.23	20.11
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	44.68	19.94
TraesCS2D01G352400.1	Wheat	cytosol	37.23	17.97
Zm00001d026647_P005	Maize	nucleus	47.02	16.52
HORVU2Hr1G085940.21	Barley	cytosol	22.98	12.37
VIT_00s0229g00200.t01	Wine grape	cytosol	2.77	9.03
VIT_11s0016g04090.t01	Wine grape	nucleus	19.79	8.27
VIT_07s0005g01370.t01	Wine grape	plastid	22.34	8.1
VIT_17s0000g04170.t01	Wine grape	cytosol	13.83	6.88
KRH35336	Soybean	cytosol	5.53	6.12
VIT_05s0049g02090.t01	Wine grape	mitochondrion	10.64	4.37
VIT_19s0090g00670.t01	Wine grape	cytosol	6.6	3.91
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	5.74	3.3
VIT_00s0229g00210.t01	Wine grape	endoplasmic reticulum, golgi	1.28	2.31
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

EntrezGene:104878427	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	MapMan:35.1	ProteinID:CBI29513	ProteinID:CBI29513.3
UniProt:D7TG90	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mmatch_repair_MutS_con_dom	EMBL:FN595795	GO:GO:0000166
GO:GO:0000404	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983
GO:GO:0032300	GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	PFAM:PF01624
PFAM:PF05188	PANTHER:PTHR11361	PANTHER:PTHR11361:SF122	SUPFAM:SSF53150	SUPFAM:SSF55271	TMHMM:TMhelix
UniParc:UPI0001BE3012	ArrayExpress:VIT_00s0485g00020	EnsemblPlantsGene:VIT_00s0485g00020	EnsemblPlants:VIT_00s0485g00020.t01	RefSeq:XP_019074084.1	SEG:seg

Description

No Description!

Coordinates

chrUn:-:30378443..30381143

Molecular Weight (calculated)

51600.0 Da

IEP (calculated)

7.089

GRAVY (calculated)

-0.056

Length

470 amino acids

Sequence
(BLAST)

001: MGKQKQQVIS RFFAPKSKAP SSSSFSIPSS PSPSPSPSPS SLPNPPTPPP KISTTVTFSP SKRLPSSHVS PSTKPPKAPK ISHPIDPSLH QKFLQKLLEP
101: SSSTPTKLPL PTTKYTPLEQ QVVDLKQKYP DVLLMVEVGY RYRFFGEDAE IAARVLAIYA HVDHNFLTAS IPTFRLNVHV RRLVSAGFKV GVVKQTETAA
201: IKAHGSNKLG PFCRGLSALY TKATLEAAED VGGGEEECGS YNNYLVCVVE KGISVENSKD CGVGGGFDVR IGIVAVKVST GDVVHGEFND NFMRAGLEAV
301: ILSMSPAELL LGYPLSKQTE KLLLAYAGPA SNVRVERTSR DCFSDGGALA EVMSLYENLS EDSRADHQVD NTEVMEQENH CLAIEVLVFV DFLVSGTKQY
401: ELLLLWTYIF ILATNHLLCE ICKCSLWFWY SLGFMNCLII GWSMWGPSPM TTFSGHCWFV IFVDDCNRMT

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.