Factsheet for VIT_17s0000g04170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03809	Soybean	nucleus	82.43	82.7
PGSC0003DMT400010422	Potato	cytosol	80.53	80.7
Solyc06g069230.2.1	Tomato	cytosol	80.42	80.59
CDY40145	Canola	cytosol, extracellular, plastid	6.98	78.57
GSMUA_Achr6P13480_001	Banana	cytosol	20.85	76.65
Bra028327.1-P	Field mustard	extracellular, vacuole	13.33	76.36
Bra001709.1-P	Field mustard	nucleus	75.34	75.99
CDX82340	Canola	nucleus	75.34	75.99
AT3G18524.1	Thale cress	nucleus	75.34	75.99
CDY52899	Canola	nucleus	75.24	75.88
GSMUA_Achr6P13490_001	Banana	cytosol	51.64	74.05
Os05t0274200-01	Rice	cytosol	72.7	72.93
EER99643	Sorghum	nucleus	71.22	71.44
TraesCS1D01G131600.3	Wheat	nucleus	71.11	71.34
Zm00001d022028_P005	Maize	nucleus	66.77	70.9
TraesCS1A01G135100.1	Wheat	nucleus	71.01	69.97
TraesCS1B01G149700.3	Wheat	nucleus	70.9	69.5
HORVU1Hr1G030930.22	Barley	plastid	68.68	65.1
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	13.44	63.18
PGSC0003DMT400021699	Potato	cytosol	9.74	57.86
VIT_19s0090g00670.t01	Wine grape	cytosol	17.88	21.31
VIT_16s0100g01310.t01	Wine grape	plastid	23.92	20.34
VIT_11s0016g04090.t01	Wine grape	nucleus	20.74	17.44
VIT_07s0005g01370.t01	Wine grape	plastid	23.81	17.35
VIT_00s0229g00210.t01	Wine grape	endoplasmic reticulum, golgi	4.76	17.31
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	6.88	13.83
VIT_00s0388g00030.t01	Wine grape	plastid	6.88	13.27
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	11.22	12.96
VIT_05s0049g02090.t01	Wine grape	mitochondrion	13.86	11.45
VIT_00s0229g00200.t01	Wine grape	cytosol	1.59	10.42

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100268052	wikigene:100268052	MapMan:14.7.1.1	Gene3D:3.30.420.110	Gene3D:3.40.1170.10
Gene3D:3.40.50.300	ProteinID:CBI15412	ProteinID:CBI15412.3	ncoils:Coil	UniProt:D7SIV1	InterPro:DNA_mismatch_repair_Msh2
InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
InterPro:DNA_mmatch_repair_MutS_con_dom	EMBL:FN594950	GO:GO:0000003	GO:GO:0000166	GO:GO:0000400	GO:GO:0000403
GO:GO:0000404	GO:GO:0000406	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006301
GO:GO:0006311	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0032137
GO:GO:0032138	GO:GO:0032300	GO:GO:0032301	GO:GO:0032302	GO:GO:0043570	GO:GO:0045128
InterPro:IPR016151	InterPro:IPR036678	EntrezGene:MSH2	wikigene:MSH2	InterPro:Msh2	InterPro:MutS_con_dom_sf
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05190	PFAM:PF05192
PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF35	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150	TIGR:TC59075	UniParc:UPI0001BE0C2F	ArrayExpress:VIT_17s0000g04170
EnsemblPlantsGene:VIT_17s0000g04170	EnsemblPlants:VIT_17s0000g04170.t01	unigene:Vvi.18906	RefSeq:XP_002275304	RefSeq:XP_002275304.2	RefSeq:XP_010663545.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:4309697..4334309

Molecular Weight (calculated)

106168.0 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.312

Length

945 amino acids

Sequence
(BLAST)

001: MDQDSQDHSK LPELKLDAKQ AQGFLSFFKT LPRDPRAVRF FDRRDYYTAH GENATFIAKT YYHTTTALRQ LGSGSDGISS VSVSKNMFET IARNLLLERT
101: DHTLELYEGS GSNWRLVKSG TPGNLGSFED VLFANNEMQD SPVIVALFPN FRENGCTVGL GFVDLTRRVL GLAEFLDDSQ FTNVESALVA LGCRECLLPS
201: ESAKSSETRT LHDALSRCGV MLTERKRTEF KARDLVQDLG RLVKGSIEPV RDLVSGFELA PGALGLLLSY AELLADESNY GNFTIQRYNL DSYMRLDSAA
301: VRALNVLESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDVNEI NCRQDLVQAF VEDTALRQDL RQHLKRISDI ERLLRTLEKR RASLQHVVKL
401: YQSSIRLPYI KSALGQYDGQ FSSLIKEKYL DPLESWTDDD HLNRFIGLVE AAVDLNELEN GEYMISSGYD AKLASLKNDQ ETLELQIHNL HKQTAIDLDL
501: PMDKSLKLEK GTQFGHVFRI TKKEEPKIRK KLTAKFIVLE TRKDGVKFTN TKLKKLGDQY QKILDEYKDC QRELVVRVVQ TAATFSEVFE NLARLLSELD
601: VLLSFADLAT SSPTAYTRPE ISPSHMGDII LEGSRHPCVE AQDWVNFIPN DCKLVREKSW FQIITGPNMG GKSTFIRQVG VNILMAQVGS FVPCDKANIS
701: VRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGATDKS LIIIDELGRG TSTYDGFGLA WAICEHIVEV IKAPTLFATH FHELTALAHE NTDHQPPEKQ
801: IVGVANYHVS AHIDSSSRKL TMLYKVEPGA CDQSFGIHVA EFANFPESVV TLAREKAAEL EDFSPTEIVS NDASDKGLKV GSKRKRESSP DDISRGAARA
901: HQFLKEFSDL PLEKMDLKEA LQQVSKLKND LEKDAVNCHW LQQFF

Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)

001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL

Arabidopsis Description

MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.