Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G131600.3 | Wheat | nucleus | 89.67 | 94.9 |
| TraesCS1A01G135100.1 | Wheat | nucleus | 89.67 | 93.22 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 89.67 | 92.74 |
| Os05t0274200-01 | Rice | cytosol | 80.54 | 85.24 |
| EER99643 | Sorghum | nucleus | 77.73 | 82.27 |
| CDY40145 | Canola | cytosol, extracellular, plastid | 6.92 | 82.14 |
| Zm00001d022028_P005 | Maize | nucleus | 72.52 | 81.24 |
| GSMUA_Achr6P13480_001 | Banana | cytosol | 19.36 | 75.1 |
| Bra028327.1-P | Field mustard | extracellular, vacuole | 12.04 | 72.73 |
| GSMUA_Achr6P13490_001 | Banana | cytosol | 45.54 | 68.89 |
| VIT_17s0000g04170.t01 | Wine grape | cytosol | 65.1 | 68.68 |
| KRH03809 | Soybean | nucleus | 64.09 | 67.83 |
| Solyc06g069230.2.1 | Tomato | cytosol | 62.79 | 66.38 |
| PGSC0003DMT400010422 | Potato | cytosol | 62.29 | 65.85 |
| AT3G18524.1 | Thale cress | nucleus | 59.58 | 63.39 |
| Bra001709.1-P | Field mustard | nucleus | 57.97 | 61.69 |
| CDY52899 | Canola | nucleus | 57.97 | 61.69 |
| CDX82340 | Canola | nucleus | 57.97 | 61.69 |
| PGSC0003DMT400021697 | Potato | cytosol, extracellular, nucleus | 11.63 | 57.71 |
| PGSC0003DMT400021699 | Potato | cytosol | 8.22 | 51.57 |
| HORVU2Hr1G085940.21 | Barley | cytosol | 18.76 | 21.42 |
| HORVU2Hr1G031870.17 | Barley | cytosol | 17.55 | 21.24 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 13.44 | 21.2 |
| HORVU5Hr1G061020.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 19.46 | 18.76 |
| HORVU6Hr1G000990.1 | Barley | cytosol | 2.21 | 14.38 |
| HORVU6Hr1G001030.1 | Barley | cytosol | 2.21 | 14.38 |
| HORVU1Hr1G047640.7 | Barley | plastid | 9.93 | 11.34 |
| HORVU2Hr1G118740.5 | Barley | plastid | 9.63 | 11.0 |
| HORVU2Hr1G087660.5 | Barley | plastid | 12.54 | 10.66 |
Protein Annotations
Description
No Description!
Coordinates
chrchr1H:-:183398248..183428997
Molecular Weight (calculated)
110417.0 Da
IEP (calculated)
6.546
GRAVY (calculated)
-0.249
Length
997 amino acids
Sequence
(BLAST)
(BLAST)
001: PRRSAHKGPP NPPSHTRARS LALPLKSLTF PPPAFAHISP SRSPALPPST PAGLYGQRRL LAGGGKAPGA QARCEASPGF HLLLQEVAEE DPRAIRLFDR
101: RDYYTAHGEN ATFIAKAYYH TMTALRQLGG NSDGISSVSV SRAMFETIAR NLLLDRTDHT LELYEGSGSS WRLTKSGTPG NIGSFEDILF ANNDMQYSPV
201: TVALFPVFRE GQLYVALSFV DMTNRKLGLA EFPEDSRFTN VESALVALGC KECLLPADFE KSIDLQPLQD AISNCNILLT ERKKAEFKSR DIVQDLGRII
301: RGSVEPIRDL LSQFDYALGA LGALVSYAEL LADDTNYGNY TIEKFNLDRY MRLDSAAVRA LNIVEGKTDV NKNFSLFGLM NRTCTAGMGK RLLNKWLKQP
401: LLDVNEINNR LDMVQAFAED PELHHGLRQH LKRISDIDRL IHALRKKSAN LQPVVKLYQS CSTIPYIKGV LQQYNGQFST SVMTRFLSSL EEWLTENRYG
501: RFANLVKTAI DLDQVDNGEY RISPLYSPDL AVLKDELSEV ENHINNLHMH TATDLDLSVD KQLKLEKGPF GHVFRISKKD EQKVRKKLTT NYIIIETRKD
601: GVKFTSAKLK KLGDQYQSLL GDYTSCQKKI VDNVVQVSCT FSEVFENFAA IISELDVLQS FADLAVSCPV PYVRPDITTS EEGDIILQGS RHPCVEAQDG
701: VNFIPNDCTL ARGKSWFQII TGPNMGGKST FIRQVGVNVL MAQVGSFVPC DQASISVRDC IFARVGAGDC QLRGVSTFMQ EMLETASILK GASEKSLIII
801: DELGRGTSTY DGFGLAWAIC EHLVEVTRAP TLFATHFHEL TALANKNGDQ HQHVPDLGIA NYHVGAHIDP SSRKLTMLYK VEPGSCDQSF GIHVAEFANF
901: PEAVIALAKS KAEELEDFTS APNLSGEPSD EVGSKRKRVF SPDDVTRGAA RARLLLEDFA ALPLDEVDGS KATEMVAKLK SDFEKDAASN PWLHQFL
101: RDYYTAHGEN ATFIAKAYYH TMTALRQLGG NSDGISSVSV SRAMFETIAR NLLLDRTDHT LELYEGSGSS WRLTKSGTPG NIGSFEDILF ANNDMQYSPV
201: TVALFPVFRE GQLYVALSFV DMTNRKLGLA EFPEDSRFTN VESALVALGC KECLLPADFE KSIDLQPLQD AISNCNILLT ERKKAEFKSR DIVQDLGRII
301: RGSVEPIRDL LSQFDYALGA LGALVSYAEL LADDTNYGNY TIEKFNLDRY MRLDSAAVRA LNIVEGKTDV NKNFSLFGLM NRTCTAGMGK RLLNKWLKQP
401: LLDVNEINNR LDMVQAFAED PELHHGLRQH LKRISDIDRL IHALRKKSAN LQPVVKLYQS CSTIPYIKGV LQQYNGQFST SVMTRFLSSL EEWLTENRYG
501: RFANLVKTAI DLDQVDNGEY RISPLYSPDL AVLKDELSEV ENHINNLHMH TATDLDLSVD KQLKLEKGPF GHVFRISKKD EQKVRKKLTT NYIIIETRKD
601: GVKFTSAKLK KLGDQYQSLL GDYTSCQKKI VDNVVQVSCT FSEVFENFAA IISELDVLQS FADLAVSCPV PYVRPDITTS EEGDIILQGS RHPCVEAQDG
701: VNFIPNDCTL ARGKSWFQII TGPNMGGKST FIRQVGVNVL MAQVGSFVPC DQASISVRDC IFARVGAGDC QLRGVSTFMQ EMLETASILK GASEKSLIII
801: DELGRGTSTY DGFGLAWAIC EHLVEVTRAP TLFATHFHEL TALANKNGDQ HQHVPDLGIA NYHVGAHIDP SSRKLTMLYK VEPGSCDQSF GIHVAEFANF
901: PEAVIALAKS KAEELEDFTS APNLSGEPSD EVGSKRKRVF SPDDVTRGAA RARLLLEDFA ALPLDEVDGS KATEMVAKLK SDFEKDAASN PWLHQFL
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Arabidopsis Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.