Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g04170.t01 | Wine grape | cytosol | 82.7 | 82.43 |
| CDY40145 | Canola | cytosol, extracellular, plastid | 7.11 | 79.76 |
| Solyc06g069230.2.1 | Tomato | cytosol | 78.24 | 78.15 |
| PGSC0003DMT400010422 | Potato | cytosol | 77.81 | 77.73 |
| Bra028327.1-P | Field mustard | extracellular, vacuole | 13.38 | 76.36 |
| AT3G18524.1 | Thale cress | nucleus | 74.73 | 75.13 |
| Bra001709.1-P | Field mustard | nucleus | 73.89 | 74.28 |
| CDX82340 | Canola | nucleus | 73.89 | 74.28 |
| CDY52899 | Canola | nucleus | 73.89 | 74.28 |
| GSMUA_Achr6P13480_001 | Banana | cytosol | 20.17 | 73.93 |
| GSMUA_Achr6P13490_001 | Banana | cytosol | 50.96 | 72.84 |
| Os05t0274200-01 | Rice | cytosol | 70.28 | 70.28 |
| TraesCS1D01G131600.3 | Wheat | nucleus | 70.06 | 70.06 |
| EER99643 | Sorghum | nucleus | 69.53 | 69.53 |
| Zm00001d022028_P005 | Maize | nucleus | 65.29 | 69.1 |
| TraesCS1A01G135100.1 | Wheat | nucleus | 69.96 | 68.72 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 69.96 | 68.36 |
| HORVU1Hr1G030930.22 | Barley | plastid | 67.83 | 64.09 |
| PGSC0003DMT400021697 | Potato | cytosol, extracellular, nucleus | 13.38 | 62.69 |
| PGSC0003DMT400021699 | Potato | cytosol | 9.55 | 56.6 |
| KRH35336 | Soybean | cytosol | 13.06 | 28.94 |
| KRH28123 | Soybean | cytosol | 18.37 | 21.79 |
| KRG91481 | Soybean | plastid | 23.14 | 20.37 |
| KRH73763 | Soybean | cytosol | 16.99 | 19.75 |
| KRH14375 | Soybean | cytosol | 16.99 | 19.7 |
| KRH39265 | Soybean | mitochondrion | 19.96 | 17.42 |
| KRH48416 | Soybean | cytosol | 20.17 | 16.83 |
| KRG96523 | Soybean | plastid | 21.76 | 16.1 |
| KRH16965 | Soybean | cytosol, mitochondrion, nucleus, plastid | 7.96 | 13.86 |
| KRH72584 | Soybean | plastid | 11.25 | 13.42 |
| KRG90177 | Soybean | cytosol | 9.55 | 13.35 |
| KRH33548 | Soybean | nucleus | 13.69 | 11.42 |
| KRH50031 | Soybean | plastid | 10.72 | 11.05 |
| KRH33415 | Soybean | cytosol, extracellular, plastid | 1.27 | 9.76 |
| KRG90178 | Soybean | mitochondrion | 4.03 | 8.48 |
| KRG88723 | Soybean | cytosol, extracellular, mitochondrion, nucleus | 0.96 | 7.44 |
| KRH20465 | Soybean | cytosol | 1.59 | 7.39 |
| KRG88725 | Soybean | nucleus | 1.59 | 5.26 |
| KRH16964 | Soybean | cytosol, nucleus | 0.85 | 4.82 |
Protein Annotations
Description
hypothetical protein
Coordinates
chr17:-:9668479..9680085
Molecular Weight (calculated)
105977.0 Da
IEP (calculated)
5.455
GRAVY (calculated)
-0.285
Length
942 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENFDDLNN KLPELKLDSK QAQGFLSFFK TLPDDPRAVR FFDRRDYYTA HGENATFIAK TYYHTTTAMR QLGSGSNALS SVSVSRNMFE TIARDLLLER
101: TDHTLELYEG SGSNWRLVKS GTPGNIGSFE DVLFANSEMQ DSPVVVALSL NYRENGCTIG LGFVDLTKRV LGMAEFLDDS HFTNVESAFV ALGCKECILP
201: IESGKSTENR MLCDVLTKCG VMLTEKKKSE FKTRDLVQDL GRLVKGPIEP VRDLVSGFEF APGALGALLS YAELLADESN YENYTLRSYN LDSYMRLDSA
301: AMRALNVLES KTDANKNFSL FGLMNRTCTA GMGKRLLHVW LKQPLVDVKE INSRLDIVQA FVEDTALRQD LRQHLKRISD IERLMHNIQK RRAGLQHIVK
401: LYQSSIRLPY IKSALERYDG QFSTMMRSRY LEPIELWTDD EHLNKFIGLV EASVDLDQLE NREYMISPSY DSILANLKDQ QELLESQIQN LHRQTADDLD
501: LPMDKALKLD KGTQFGHVFR ITKKEEPKIR KKLNTQFIIL ETRKDGVKFT NTKLKKLGDQ YQQILEEYKS CQKKLVDRVV QTAATFSEVF ESLAEIISEL
601: DVLLSFADLA SSCPTPYTRP DITSSDEGDI TLEGCRHPCV EAQDWVNFIP NDCKLVRGKT WFQIITGPNM GGKSTFIRQV GVNILMAQVG SFVPCDNASI
701: SVRDCIFARV GAGDCQLRGV STFMQEMLET ASILKGATDK SLIIIDELGR GTSTYDGFGL AWAICEHIVE VIKAPTLFAT HFHELTALAL ENVSNDSQKQ
801: IVGVANYHVS AHIDSSTRKL TMLYKVEPGA CDQSFGIHVA EFANFPESVV TLAREKAAEL EDFSPSATSL NHTTQEVGSK RKRAFEPDDM SQGAAKARQF
901: LEAFVALPLE TMDKMQALQE VKKLTDTLEK DAENCNWLQQ FL
101: TDHTLELYEG SGSNWRLVKS GTPGNIGSFE DVLFANSEMQ DSPVVVALSL NYRENGCTIG LGFVDLTKRV LGMAEFLDDS HFTNVESAFV ALGCKECILP
201: IESGKSTENR MLCDVLTKCG VMLTEKKKSE FKTRDLVQDL GRLVKGPIEP VRDLVSGFEF APGALGALLS YAELLADESN YENYTLRSYN LDSYMRLDSA
301: AMRALNVLES KTDANKNFSL FGLMNRTCTA GMGKRLLHVW LKQPLVDVKE INSRLDIVQA FVEDTALRQD LRQHLKRISD IERLMHNIQK RRAGLQHIVK
401: LYQSSIRLPY IKSALERYDG QFSTMMRSRY LEPIELWTDD EHLNKFIGLV EASVDLDQLE NREYMISPSY DSILANLKDQ QELLESQIQN LHRQTADDLD
501: LPMDKALKLD KGTQFGHVFR ITKKEEPKIR KKLNTQFIIL ETRKDGVKFT NTKLKKLGDQ YQQILEEYKS CQKKLVDRVV QTAATFSEVF ESLAEIISEL
601: DVLLSFADLA SSCPTPYTRP DITSSDEGDI TLEGCRHPCV EAQDWVNFIP NDCKLVRGKT WFQIITGPNM GGKSTFIRQV GVNILMAQVG SFVPCDNASI
701: SVRDCIFARV GAGDCQLRGV STFMQEMLET ASILKGATDK SLIIIDELGR GTSTYDGFGL AWAICEHIVE VIKAPTLFAT HFHELTALAL ENVSNDSQKQ
801: IVGVANYHVS AHIDSSTRKL TMLYKVEPGA CDQSFGIHVA EFANFPESVV TLAREKAAEL EDFSPSATSL NHTTQEVGSK RKRAFEPDDM SQGAAKARQF
901: LEAFVALPLE TMDKMQALQE VKKLTDTLEK DAENCNWLQQ FL
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Arabidopsis Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.