CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35336	Soybean	cytosol	35.05	88.24
VIT_16s0100g01310.t01	Wine grape	plastid	69.72	67.15
AT4G25540.1	Thale cress	nucleus, plastid	62.52	61.89
CDY50199	Canola	plastid	61.4	61.12
CDX92716	Canola	plastid	62.34	61.08
Bra019156.1-P	Field mustard	plastid	61.78	60.98
Solyc03g025890.1.1	Tomato	nucleus	62.8	60.16
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	26.07	59.36
VIT_00s0388g00030.t01	Wine grape	plastid	26.45	57.76
TraesCS2D01G352400.1	Wheat	cytosol	50.75	55.75
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	54.58	55.46
HORVU2Hr1G085940.21	Barley	cytosol	44.86	54.98
TraesCS2B01G372300.1	Wheat	plastid	55.51	53.8
EES11671	Sorghum	plastid	55.23	53.73
Zm00001d026647_P005	Maize	nucleus	54.58	43.65
KRH03809	Soybean	nucleus	20.37	23.14
KRH28123	Soybean	cytosol	16.36	22.04
KRG96523	Soybean	plastid	25.7	21.6
KRH39265	Soybean	mitochondrion	20.75	20.57
KRH73763	Soybean	cytosol	15.23	20.12
KRH48416	Soybean	cytosol	21.03	19.93
KRH14375	Soybean	cytosol	14.95	19.7
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	8.22	16.27
KRG90177	Soybean	cytosol	9.63	15.28
KRH72584	Soybean	plastid	10.93	14.81
KRH33548	Soybean	nucleus	14.67	13.89
KRH33415	Soybean	cytosol, extracellular, plastid	1.59	13.82
KRG90178	Soybean	mitochondrion	5.33	12.72
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	1.4	12.4
KRH50031	Soybean	plastid	9.35	10.94
KRH20465	Soybean	cytosol	1.68	8.87
KRG88725	Soybean	nucleus	2.15	8.07
KRH16964	Soybean	cytosol, nucleus	0.65	4.22
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100789883	MapMan:14.7.1.2	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
EMBL:ACUP02012689	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp
InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	EnsemblPlantsGene:GLYMA_20G157600	GO:GO:0000166	GO:GO:0000404
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0032300
GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678	UniProt:K7N3P1	EnsemblPlants:KRG91481	ProteinID:KRG91481
ProteinID:KRG91481.1	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188
PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF122
SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271
UniParc:UPI000296AB06	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:39639927..39648568

Molecular Weight (calculated)

117838.0 Da

IEP (calculated)

7.505

GRAVY (calculated)

-0.116

Length

1070 amino acids

Sequence
(BLAST)

0001: MGKQKQQVIS RFFAPKPKSP PPPPPPPPKI SATVTFSPAK RRLTSNFTTS RKHPKLSPHT QNPVPPSLHQ RFLQKLLEPS TPQQHPASSS KPPTYTPLEQ
0101: QVLDLKAKHP DVLLMVEVGY KYRFFGQDAE HASRVLGIYA HMDHNFLTAS IPTFRLNVHV RRLVTAGYKV GVVKQTETAA IKAHGSNRSA PFERGLSALY
0201: TKATLEAAPD LGGAEDGCGG ESNYLLCVVE KSVLDEKGGV DARIGIVAVE ISTGDVVFGE FCDGFLRSAL EAVVLNLSPA ELLLGDPLSK QTEKLLLDFA
0301: GPASNVRVER FSRDCFIDGG ALAEVMTLYE NMHIDSPSDS IQSNDLTENR SQKLIIKEVM NMPDLAVQAL ALTIRHLKEF GFERILCSGA SIRPFSSNTE
0401: MTLSANALQQ LEVLKNNSDG SEIGSLLQIM NRTLTIFGSR LLRHWVSHPL CDQTLISARL HAVSEIAQSM GSCNSVKNLV RVEEDPDVAI VQPELAYTLS
0501: LVLTTLGRAP DIQRGITRIF HCTATPSEFV AVIQAILSAG KQLQQLNIGE GNNNTLRPNL LKKLILTASS DSVIGNAAKM LSSLNIDSAD LGDLTKLIIA
0601: SEGQFPEVIR AREAFKLAVE QLDSMIDFYR KQLGMKNLEF ISISGTTHLI ELSTDVKVPS NWVKVNSTKK TIRYHPPEVL TTLDKLSLAK EELTVACRAA
0701: WNNFLTDFSK HYAEFQAAVQ ALAALDCLHS LAILSRNKGY VCPVFVDDHE PVQIQISSGR HPVLETTLQD NFVPNDTNMH ADGEYCQIVT GPNMGGKSCY
0801: IRQVALIVIM AQVGSFVPAS SAKLHVLDRI YTRMGASDSI QLGRSTFLEE LSETSHILNS CTEHSLVIID ELGRGTSTHD GMAIAHATLH YLLKQKRSMV
0901: LFVTHYPKIA SLATEFPGSV AAYHVSHLIS HDASKNSNLD HDVTYLYKLV PGVSERSFGF KVAQLAQLPS HCISRAIVMA SKLEALVNSR IHGRSTKELL
1001: LDTLVIGQEK EQLMAQSLDR PHKEFDMAYK DFYLNLKAAT EDDDWAKSFH LLEHARSIAK KLIGRSMQYV

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.