CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39265	Soybean	mitochondrion	89.28	93.42
Solyc07g018350.2.1	Tomato	nucleus	44.91	62.52
VIT_11s0016g04090.t01	Wine grape	nucleus	60.94	61.21
AT3G24495.1	Thale cress	mitochondrion	58.55	59.6
CDY25338	Canola	plastid	57.84	59.36
CDY47171	Canola	mitochondrion, nucleus	57.4	59.29
Bra028373.1-P	Field mustard	mitochondrion, plastid	58.19	59.24
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	53.23	53.95
TraesCS3B01G136600.1	Wheat	mitochondrion	49.07	45.34
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	48.72	45.01
TraesCS3D01G119400.1	Wheat	mitochondrion	48.63	44.93
Os01t0180600-01	Rice	mitochondrion, nucleus	47.83	44.12
KXG31683	Sorghum	mitochondrion, nucleus	47.83	43.87
Zm00001d039596_P004	Maize	nucleus	47.39	43.18
KRH35336	Soybean	cytosol	10.27	27.29
KRG96523	Soybean	plastid	28.61	25.37
KRH28123	Soybean	cytosol	15.06	21.41
KRG91481	Soybean	plastid	19.93	21.03
KRH03809	Soybean	nucleus	16.83	20.17
KRH33415	Soybean	cytosol, extracellular, plastid	1.86	17.07
KRH14375	Soybean	cytosol	12.22	17.0
KRH73763	Soybean	cytosol	12.13	16.91
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	1.59	14.88
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	6.82	14.23
KRG90178	Soybean	mitochondrion	5.4	13.62
KRH72584	Soybean	plastid	9.12	13.04
KRH33548	Soybean	nucleus	12.49	12.48
KRG90177	Soybean	cytosol	7.26	12.17
KRH20465	Soybean	cytosol	2.04	11.33
KRH50031	Soybean	plastid	8.95	11.05
KRG88725	Soybean	nucleus	2.21	8.77
KRH16964	Soybean	cytosol, nucleus	0.53	3.61

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	UniProt:A0A0R0J136
EMBL:ACUP02004229	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	EnsemblPlantsGene:GLYMA_07G087700	GO:GO:0000166	GO:GO:0000404	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0030983	GO:GO:0032300	GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678
EnsemblPlants:KRH48416	ProteinID:KRH48416	ProteinID:KRH48416.1	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488
PFAM:PF01624	PFAM:PF05188	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF121	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150
SUPFAM:SSF55271	UniParc:UPI0006EDB2DD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:8111751..8121053

Molecular Weight (calculated)

124883.0 Da

IEP (calculated)

7.590

GRAVY (calculated)

-0.175

Length

1129 amino acids

Sequence
(BLAST)

0001: MEGARQGEVE TVSPMGGARQ ADVMLILLRT NCSTQGLSAQ IFFGAKNFNT MLRYFHRISG DRPPTTPPVQ QPNGNVTAAV NQRPPADDVR GTDTPPEKVP
0101: RRVLPANFAP NEKESGPSLF ESIMHKFVKV DDNERVTQRS HSLNGSLPKS SLPVGICADT DCKVVNKAEA AFQPLVKVKD NAVNFKEKAN QENIVVVETD
0201: DNVTGPETPG MLPLASHVKR SREDGSKFGS LLNSGKRVRF LDGSLELDMT KKEAEVASKF EWLDPSRIRD ANGRRPDNPL YDRTTLYIPP EVLGKMSASQ
0301: KQYWSVKCKY MDVLLFFKVG KFYELYEMDA DIGHKELDWK ITLSGVGKCR QVGISESGID DAVLKLVARG YKVGRVEQLE TSGEAKSRGA NSVVRRKLVQ
0401: VLTPSTNVDG NIGPDAVHLL AIKEENNVLD NGAVVYGFAF VDCARLRFWV GSIDDDASCS ALGALLVQVS PKEVIYDSRG LSKEAQKALR KFSLNGSRTL
0501: QFTPVQSITD LVNNEIRDLI HSKGYFKGSS HLLDHVLSNV IHREITLSAL GRLIGHLDRL MLDDVLQNGD LYPYQVYKGC LKMDGPTMIN LELFFNNEDG
0601: GKSGSLYNCL DKCVTSSGKR LLRNWICCPL IDPEIINKRL DVVDDLMANP EIVPHIAQHL RRLPDLEHLL GRIKSSLQLS GPLLLPLLGK KILKQRVKVF
0701: GSLVRGLRTA LSLLLLLQKE QPLISSLTKV FKLPILTGSN GLDQFLAQFE AAVDSDFPNY QNHNVADSDA ETLKILAELF LEKAAQWFEV VHAINCIDVL
0801: RSFAVTSTFS CGTMSRPVIV ASKGTSKDNG RTVLKMKGLW HPFALGDSGC LPVPNDVILG ENEDGLYPRT LLLTGPNMGG KSTLLRSTCL AVIMAQLGCY
0901: VPCESCVLSA VDIIFTRLGA KDRIMTGEST FFIECTETAS VLQNATQDSL VILDELGRGT STFDGYAIAY AVFRHLIEKV NCRMLFATHY HPLTKEFASH
1001: PRVIMQHMAC AFNSKSDTHS MRDQELVFLY RLASGPCPES YGLQVALMAG IPEKTVNIAS KSSQKMKKSI GQSFRSSEQR SEFSTLHEEW LKTLVSISRI
1101: EDCNSLDEDA LDTLISLWYE LKTSFISGK

Best Arabidopsis Sequence Match ( AT3G24495.1 )
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Arabidopsis Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.