Factsheet for TraesCS3D01G119400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G136600.1	Wheat	mitochondrion	97.22	97.22
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	96.4	96.4
Os01t0180600-01	Rice	mitochondrion, nucleus	77.25	77.12
KXG31683	Sorghum	mitochondrion, nucleus	73.0	72.46
Zm00001d039596_P004	Maize	nucleus	71.36	70.38
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	52.45	57.54
Solyc07g018350.2.1	Tomato	nucleus	36.58	55.12
VIT_11s0016g04090.t01	Wine grape	nucleus	48.77	53.02
KRH39265	Soybean	mitochondrion	45.17	51.16
CDY25338	Canola	plastid	45.91	51.0
AT3G24495.1	Thale cress	mitochondrion	46.07	50.77
CDY47171	Canola	mitochondrion, nucleus	45.34	50.69
Bra028373.1-P	Field mustard	mitochondrion, plastid	45.99	50.68
KRH48416	Soybean	cytosol	44.93	48.63
TraesCS5D01G212500.1	Wheat	nucleus	23.65	25.4
TraesCS2D01G352400.1	Wheat	cytosol	16.04	20.12
TraesCS1D01G131600.3	Wheat	nucleus	14.65	19.0
TraesCS1D01G316200.1	Wheat	cytosol	12.19	18.24
TraesCS2D01G359500.1	Wheat	mitochondrion	13.01	14.1
TraesCS2D01G565200.1	Wheat	plastid	8.27	11.01
TraesCS1D01G178000.1	Wheat	plastid	7.2	10.58

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_Msh2
InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF121	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	SUPFAM:SSF55271	EnsemblPlantsGene:TraesCS3D01G119400	EnsemblPlants:TraesCS3D01G119400.1	TIGR:cd03286	SEG:seg

Description

No Description!

Coordinates

chr3D:+:74355283..74364394

Molecular Weight (calculated)

134473.0 Da

IEP (calculated)

8.018

GRAVY (calculated)

-0.278

Length

1222 amino acids

Sequence
(BLAST)

0001: MQPRRQQQSI RSFLHPRPSP AQEASGAGTT PERPPRPPAA SSVDGIMERL VRPPSQGRNK DATQIRNAER ALPGKNEDTS NEQPSASFPV RYNGKYSRGT
0101: VLFAEHSTDT TPPQEPLKFS ARSSTDEFVR ASTLFPEIGS DQTLLQECPK KLSSECPSNQ YVQANSVFEA FDVQTPSQDP LKRIFSGPFH GADTPLSEYR
0201: SYPIPLQHPS KKLSSGSSSG EYLRAVTPLG LDSNDTPTAK HSKKLFSGSS DHSYIKATNL FPEFDSNGTP LQNHSNKFSV SMNSKNIGAP ATLFPELDSV
0301: LLKPETPVTQ AVAPRGKRVQ QDQCMTANNC QSPLWGSNKK VKSAHCSPAG KMVHDEMAES ARSKFEWLNP LNIRDANKRR PDDPLYDKRT LFIPPDALRK
0401: MSTSQKQYWT IKCKYMDVLL FFKVGKFYEL YEVDAEIGQK ELDWKMTISG VGKCRQVGIS ESGIDNAVEK LLARGYKVGR IEQMESAAQA KARGPNSVIE
0501: RKLAHVSTPS TAADSNIGPD AVHLLALKEV TLASNGSRVY GFAFLDYAAL KIWVGSLQDD DSSAALGALL VQVSPREIIY ESSGLSRESR KSMIKYASAG
0601: SVKMQLTPLP GTDFSDASQI QMLVHSKGYF KASTDSWLSA LDYSVNQDAV ICALGGLIGH LTRLMLDDAL KNGEVLPYNV YQTCLRMDGQ TLVNLEIFGN
0701: NFDGGSSGTL YKHLNHCITA SGKRLLRRWI CHPLKDVDAI NRRLDIVEGF IQHCGVGSVT LEHLRKIPDL ERLLGRVRST VGLTSAVLLP FVGEKILKRR
0801: IKTFCMLIKG LRVAIDLLSA LRREDHGIPA LSKSVDIPTL SSLDESVHQF EEAIRIDFEQ YQDHDIKDHD ATTLANLVEH FVGKATEWSL VINAISTVDV
0901: LRSFAAMALS SFGTMCRPRI LLKDKSPILR MKGLWHPYAF AESGTGLVPN DLSLGQDLLG HNRFALLLTG PNMGGKSTIM RATCLAIVLA QLGCYVPCIS
1001: CELTLADSIF TRLGATDRIM SGESTFLVEC SETASVLQNA TEDSLVLLDE LGRGTSTFDG YAIAYAVFRH LVEQVRCRLL FATHYHPLTK EFASHPHVSL
1101: QHMACMLRPR SGGNGEMELT FLYRLVSGAS PESYGLQVAT MAGIPKSIVE KAAVAGEMMK SRIAGNFRSS EGRAEFSTLH EDWLQTILAI GGVKDAHLDE
1201: DTMDTMFCVA QELKSHFRKG GS

Best Arabidopsis Sequence Match ( AT3G24495.1 )
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Arabidopsis Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.