Factsheet for TraesCS2D01G565200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G588000.2	Wheat	plastid	95.42	95.52
TraesCS2B01G595200.1	Wheat	endoplasmic reticulum, plastid, vacuole	95.31	95.21
HORVU2Hr1G118740.5	Barley	plastid	82.22	86.37
EES11666	Sorghum	plastid	74.92	75.33
Os04t0680700-01	Rice	plastid	40.79	75.25
Zm00001d001806_P001	Maize	plastid	73.72	75.03
GSMUA_Achr7P04320_001	Banana	plastid	57.14	57.58
Solyc02g078390.2.1	Tomato	plastid	49.95	50.5
AT1G65070.2	Thale cress	plastid	46.13	48.29
CDX91525	Canola	plastid	45.8	47.35
Bra022497.1-P	Field mustard	plastid	45.26	46.84
CDY16386	Canola	plastid	45.58	35.39
TraesCS1D01G178000.1	Wheat	plastid	24.43	26.92
PGSC0003DMT400001555	Potato	cytosol	2.84	13.2
TraesCS1D01G131600.3	Wheat	nucleus	10.91	10.62
TraesCS2D01G359500.1	Wheat	mitochondrion	12.65	10.28
TraesCS2D01G352400.1	Wheat	cytosol	10.8	10.16
TraesCS1D01G316200.1	Wheat	cytosol	8.94	10.04
TraesCS5D01G212500.1	Wheat	nucleus	12.1	9.75
TraesCS3D01G119400.1	Wheat	mitochondrion	11.01	8.27
KRH33415	Soybean	cytosol, extracellular, plastid	0.87	6.5
KRG88725	Soybean	nucleus	1.09	3.51

Protein Annotations

Gene3D:3.30.1370.110	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0016887	GO:GO:0030983	GO:GO:0045910	InterPro:IPR002625	InterPro:MutS2	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF01713	PIRSF:PIRSF005814	ScanProsite:PS00486	PFscan:PS50828	PANTHER:PTHR11361
PANTHER:PTHR11361:SF14	SMART:SM00463	SMART:SM00533	SMART:SM00534	SUPFAM:SSF160443	SUPFAM:SSF48334
SUPFAM:SSF52540	InterPro:Smr_dom	InterPro:Smr_dom_sf	EnsemblPlantsGene:TraesCS2D01G565200	EnsemblPlants:TraesCS2D01G565200.1	SEG:seg

Description

No Description!

Coordinates

chr2D:-:635226982..635231451

Molecular Weight (calculated)

98986.3 Da

IEP (calculated)

6.472

GRAVY (calculated)

-0.185

Length

917 amino acids

Sequence
(BLAST)

001: MATAAAAVSN LSLRLPSALP FTVSFPTRLS RIPHAPLRRL RTASSRTLAA PATSEVPEAE ELRLEAESAL EWGGVCARLA DFAATAAGRA ACGEGRVPVG
101: QSREESERLL EQTAAASLLS APLDFGGVGD VSAVVAAAAR GRLLAVREIC GVGGSLRAAR GVFDQVKSLA EEMPDGRYTS LLDILQGCDF LTELVKMIEF
201: CLDSNLSMVL DRASERLGTI RKERRMNAEM LESLLRDTSV KIFQAGGADS PVVTKRRSRM CVGVKASHKH LVPGGIVLSS SGSGATYFME PRDAVKLNNT
301: EVKLSGDERA EELAVLGLLT SRIADSRTKI RHLMGKILEL DLACARGSYA LWINGVRPAF SDRDNSSESD PSSAYSVFIE GIRHPLLLEQ SLGIAEESAT
401: TEATEVGQQQ LSEDHPVPSM PVPLDMHVKN DTRIVVISGP NTGGKTATMK TLGLASLMSK AGMFFPAKGR PRLPWFDQVL ADIGDHQSLE NSLSTFSGNI
501: SRLRKIAQVV STDSLVLIDE IGSGTDPSEG VSLSTSILKY LASRLNLAVV TTHYADLSRL KAVDDRFENA AMEFCLETLK PTYRVLWGST GNSNALSIAK
601: SIGFDQKVLD RAQEWVEKLL PDKQKERQGL LYGSLLDERN LLESQANEVA SVLSEVEDLY NEIRLEADGL DSRVAALKAK ESQKVQQELK SVKSQMDLLI
701: KNFEVQLKNS KLEQYNSIMR KAESATASLA AAHQPTEFAV SDGENKSLYV PQIGDKVYVE GLGGGSMATV VEILSEDGSC MVQYGKIKVR AKNNKMKLAQ
801: RDTKETSASS SAQGKGSRAQ KRSPAGTAQT GSVSFAPAVQ TSRNTVDLRG MRVGEASHEL EMAIDGCRPY QVLFVVHGMG TGAVKECALD VLRSHPRVVR
901: IEDESPLNYG CTVAYIE

Best Arabidopsis Sequence Match ( AT1G65070.2 )
(BLAST)

001: MNTYSPLQLI PTPIHLKSSR AASPSSLRVA SPLIIRAASS DDSQSVENQT LEVLEWRALC NQLSPFASTT MGLSATKNAE IPVGNSPEES RNLLNETSAA
101: LAAMEMMKSR GLGLSEIQDL SDIVERAVSG QLLTVRELCT VRSTLTAATS TFQKLRKAAI SDNRVTPLVD ILQGCDFKDT LQQKISFCID CNMTMILDRA
201: SEDLEIIRSE RRRNMENLDS LLKKISTKIF LAGGINKPLI TQRRSRMCVA IRATHKSLLP GGVVLSVSSS RATCFIEPKE AVELNNMEVR HANSEKAEEM
301: AILSILTSEV VMAQREILHL LDRILELDIA FARASHANWI NGVYPNVTSE HTKTPGLAVD IDSAQHPLLL GSVLGSPNGG DIFPVPVDIK VESSAKVVVI
401: SGPNTGGKTA LLKTLGLLSL MSKSGMYLPA KNCPRLPWFD LILADIGDPQ SLEQSLSTFS GHISRIRQIL DIASENSLVL LDEICSGTDP SEGVALATSI
501: LQYIKNRVNV AVVSTHYGDL SRLKDNEPRF QNAAMEFSME TLQPTFRVLW GSTGLSNALR VAKSIGFNKR ILENAHKWTE KLNPEQDVER KGSLFQSLME
601: ERNKLKLQAT KTAAFHRDLM NLYHELEHES HDLDKRERAL LKKETQKVQE DLNSAKSKME RLVAEFESQL EITQADQYNS LILKTEEAVA EIIEACCPMD
701: PDSLEEEYSD YSPQAGEKVL VTGLGDKLGT VVEEPGDDDD TVLVQHGKIR VRIKKKDIKP LPRSTSSQTS NRSLRSKRQI NMKELGSVLQ MQSEPVRIQT
801: SKNTLDLRGM RAEEAVHQLD MAISGRDSGS ILFIIHGMGA GIIKELVLER LRKNTRVSRY EQANPMNHGC TVAYIK

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:Q9SS53]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.