CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33415	Soybean	cytosol, extracellular, plastid	41.75	96.75
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	34.39	80.99
KRG90178	Soybean	mitochondrion	41.05	26.12
KRH33548	Soybean	nucleus	40.7	10.27
KRH39265	Soybean	mitochondrion	9.12	2.41
KRH48416	Soybean	cytosol	8.77	2.21
KRG96523	Soybean	plastid	9.82	2.2
KRG91481	Soybean	plastid	8.07	2.15
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	3.51	1.85
Os04t0680700-01	Rice	plastid	2.81	1.61
KRH03809	Soybean	nucleus	5.26	1.59
KRH20465	Soybean	cytosol	1.05	1.48
Zm00001d001806_P001	Maize	plastid	4.56	1.44
KRH50031	Soybean	plastid	4.56	1.42
KRH72584	Soybean	plastid	3.51	1.27
EES11666	Sorghum	plastid	3.86	1.21
TraesCS2D01G565200.1	Wheat	plastid	3.51	1.09
TraesCS2A01G588000.2	Wheat	plastid	3.16	0.98
TraesCS2B01G595200.1	Wheat	endoplasmic reticulum, plastid, vacuole	3.16	0.98
KRH35336	Soybean	cytosol	0.7	0.47
HORVU2Hr1G118740.5	Barley	plastid	1.05	0.34
KRG90177	Soybean	cytosol	0.7	0.3
KRH73763	Soybean	cytosol	0.7	0.25
KRH14375	Soybean	cytosol	0.7	0.25
KRH28123	Soybean	cytosol	0.35	0.13
KRH16964	Soybean	cytosol, nucleus	0.0	0.0
PGSC0003DMT400001555	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.1170.10	MapMan:35.1	UniProt:A0A0R0E4P5	InterPro:DNA_mismatch_repair_MutS_N	EnsemblPlantsGene:GLYMA_U032000	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030983	InterPro:IPR016151	EnsemblPlants:KRG88725	ProteinID:KRG88725	ProteinID:KRG88725.1	PANTHER:PTHR11361
PANTHER:PTHR11361:SF82	SUPFAM:SSF55271	UniParc:UPI0006ED73C9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chrscaffold_31:+:105578..109760

Molecular Weight (calculated)

32604.2 Da

IEP (calculated)

8.618

GRAVY (calculated)

-0.572

Length

285 amino acids

Sequence
(BLAST)

001: MKIVKKSRSK QPIRIVRRGI QSEEYGASEI RKSEEYVASE IRKQKNHRGS NKKSNESLKS TESMEEFVIP GDIPELDSLV VYEKELRSDF FSNVAAACLE
101: PSRERKKKNR HKSRNKDESH DLIKSITDFV IPGDVPAIDS LMRLQMCRKL STVQLTERLD YSNLPGLNSN MKNGRDGIIV RKLMEESIFM CSLKEGTLNW
201: EMLQFKPKFP RQVLLCRVGE FYEAWGINVC ILVEYEGLNP FGGLQSDSIP RDGCPVVNLR QTLDDRTQSG YSVCLPSYQS MSTCC

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.