CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33415	Soybean	cytosol, extracellular, plastid	21.21	77.24
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	19.2	71.07
KRG88725	Soybean	nucleus	26.12	41.05
KRH33548	Soybean	nucleus	87.72	34.78
VIT_05s0049g02090.t01	Wine grape	mitochondrion	70.76	27.71
CDY49227	Canola	mitochondrion	68.97	27.49
CDX77432	Canola	mitochondrion	68.53	27.36
Bra015033.1-P	Field mustard	mitochondrion	68.3	27.27
AT3G24320.1	Thale cress	mitochondrion	67.41	27.01
Solyc09g090870.2.1	Tomato	mitochondrion	64.73	25.51
TraesCS2A01G362100.1	Wheat	mitochondrion, nucleus	63.62	25.27
KXG26672	Sorghum	mitochondrion, nucleus	63.62	25.2
TraesCS2B01G379900.1	Wheat	mitochondrion	63.39	25.18
TraesCS2D01G359500.1	Wheat	mitochondrion	63.17	25.09
Os04t0507000-01	Rice	mitochondrion	62.95	24.91
Zm00001d025816_P002	Maize	mitochondrion, nucleus	63.39	24.87
HORVU2Hr1G087660.5	Barley	plastid	63.39	24.21
KRH48416	Soybean	cytosol	13.62	5.4
KRH39265	Soybean	mitochondrion	12.95	5.38
KRG91481	Soybean	plastid	12.72	5.33
KRG96523	Soybean	plastid	14.06	4.95
HORVU6Hr1G000990.1	Barley	cytosol	1.56	4.58
HORVU6Hr1G001030.1	Barley	cytosol	1.56	4.58
KRH03809	Soybean	nucleus	8.48	4.03
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	4.46	3.7
KRH28123	Soybean	cytosol	5.58	3.15
KRH73763	Soybean	cytosol	5.13	2.84
KRH14375	Soybean	cytosol	5.13	2.83
KRH72584	Soybean	plastid	4.69	2.66
KRH50031	Soybean	plastid	5.13	2.52
KRH35336	Soybean	cytosol	1.56	1.65
KRH16964	Soybean	cytosol, nucleus	0.22	0.6
KRG90177	Soybean	cytosol	0.0	0.0
KRH20465	Soybean	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.1170.10	MapMan:35.1	UniProt:A0A0R0EGR7	EMBL:ACUP02012558	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_N
EnsemblPlantsGene:GLYMA_20G073500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	InterPro:IPR016151	EnsemblPlants:KRG90178	ProteinID:KRG90178
ProteinID:KRG90178.1	PFAM:PF01624	PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	SUPFAM:SSF55271	UniParc:UPI0006EE1159
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:25918933..25948317

Molecular Weight (calculated)

50046.3 Da

IEP (calculated)

8.569

GRAVY (calculated)

-0.202

Length

448 amino acids

Sequence
(BLAST)

001: MFRLATRNVA LFLPRWCSLA RFSPSPPFPF LISSLPSRFL RINGHVKNVT SYAEKKVSRG STKATKKPKV PNNNGLDDKD LPHILWWKER LQMCRKLSTV
101: QLIERLEFSN LLGLNSNLKN GSLKEGTLNW EMLQFKSKFP RQVLLCRVGE FYEAWGIDAC ILVEYVGLNP IGGLRSDSIP RAGCPVVNLR QTLDDLTTNG
201: YSVCIVEEAQ GPSQARSRKR RFISGHAHPG NPYVYGLATV DHDLNFPEPM PVVGISHSAR GYCINMVLET MKTYSSEDCL TEEAVVTKLR TCQYHHLFLH
301: TSIRQNSSGT CDWGEFGEGG LLWGECSSRH FEWFDGNPIS DLLAKVKELY SLDEEVTFRN ATVYSGNRAQ PLTLGTSTQI GAIPTEGIPS LLKVLLSRNC
401: NGLPALYIRD LLLNPPSYEI ASKIQATCKL MSSVTCSIPE FTCVSSAK

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.