Factsheet for Bra015033.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77432	Canola	mitochondrion	99.82	99.82
CDY49227	Canola	mitochondrion	98.22	98.04
AT3G24320.1	Thale cress	mitochondrion	91.0	91.32
VIT_05s0049g02090.t01	Wine grape	mitochondrion	69.79	68.44
KRG90178	Soybean	mitochondrion	27.27	68.3
KRH33548	Soybean	nucleus	66.4	65.93
Solyc09g090870.2.1	Tomato	mitochondrion	66.67	65.79
KRG90177	Soybean	cytosol	37.79	62.91
KXG26672	Sorghum	mitochondrion, nucleus	62.48	61.98
TraesCS2D01G359500.1	Wheat	mitochondrion	61.94	61.61
TraesCS2B01G379900.1	Wheat	mitochondrion	61.59	61.26
TraesCS2A01G362100.1	Wheat	mitochondrion, nucleus	61.5	61.17
Os04t0507000-01	Rice	mitochondrion	61.5	60.95
Zm00001d025816_P002	Maize	mitochondrion, nucleus	61.76	60.68
HORVU2Hr1G087660.5	Barley	plastid	61.68	58.99
HORVU6Hr1G000990.1	Barley	cytosol	6.24	45.75
HORVU6Hr1G001030.1	Barley	cytosol	6.24	45.75
Bra028327.1-P	Field mustard	extracellular, vacuole	3.21	21.82
Bra022693.1-P	Field mustard	plastid	10.7	14.96
Bra000896.1-P	Field mustard	plastid	17.11	14.36
Bra021052.1-P	Field mustard	cytosol	9.8	13.89
Bra022497.1-P	Field mustard	plastid	10.87	13.77
Bra001709.1-P	Field mustard	nucleus	11.5	13.77
Bra019156.1-P	Field mustard	plastid	13.28	13.75
Bra035777.1-P	Field mustard	cytosol	9.98	13.25
Bra028373.1-P	Field mustard	mitochondrion, plastid	12.75	12.89
Bra035922.1-P	Field mustard	cytosol	1.25	8.28
Bra035921.1-P	Field mustard	cytosol	2.67	8.02
Bra035923.1-P	Field mustard	cytosol	0.98	7.19

Protein Annotations

MapMan:13.5.8.4	Gene3D:3.40.1170.10	Gene3D:3.40.1440.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra015033	EnsemblPlants:Bra015033.1
EnsemblPlants:Bra015033.1-P	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:GIY-YIG_endonuc_sf	GO:GO:0000002
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408
GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030983	GO:GO:0032042	GO:GO:0042651	InterPro:IPR016151	InterPro:IPR035901
UniProt:M4DEW1	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF82	SMART:SM00534	SUPFAM:SSF52540	SUPFAM:SSF55271	SUPFAM:SSF82771	UniParc:UPI0002540CF8
SEG:seg	:	:	:	:	:

Description

AT3G24320 (E=0.0) MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROTEIN HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding / mismatched DNA binding / nuclease

Coordinates

chrA07:+:4093598..4099410

Molecular Weight (calculated)

124138.0 Da

IEP (calculated)

7.489

GRAVY (calculated)

-0.148

Length

1122 amino acids

Sequence
(BLAST)

0001: MHWIATRNAV VSLPRWRSFA FLFRSPFRTH SSLKPSPLLL LNTRYSERRY CLGDGKSVKG ITTASSKKVK TKSTDVLTDK DLSHLLWWKE RLQTCKKPST
0101: LQLIERLMYT NLLGLDPSLR NGSLKDGNLN WEMLQFKSRF PREVLLCRVG DFYEAIGIDA CILVEYAGLN PFGGLRSDSV PKAGCPVVNL RQTLDDLTRN
0201: GFSVCIVEEI QGPTPARSRK GRFISGHAHP GSPYVYGLVG VDHDLDFPEP MPVVGISRSA RGYCMISIFE TMKAYSLDDG LTEEALVTKL RTRRCHHLFL
0301: HASLRHNASG TCRWGEFGEG GLLWGECSGR NFEWFEGDTL SELLTKVRDV YGLDDEVSFR NVNVPLENRP RPLHLGTATQ IGALPTEGIP CLLKVLLPST
0401: CSGLPSLYLR DLLLNPPAYD IALKIQETCK LMSTITCSVP EFTCVSSAKL VKLLEQREAN YIEFCRIKNV LDEVLHMHRH PELVEILKLL MEPTWVATGL
0501: KIDFETFVNE CHWASDSIGE MISLDDDESH QNVSKCANVP NEFFYDMESS WRGRVKGIHI EEEITQVAKS AEALSLAVTE DFHPIISRIK AMAASLGGSK
0601: GEIVYAKEHE SVWFKGKRFT PSVWGGTAGE EQIKQLKPAF DSKGKKVGEE WFTTQKVETA LVRYHEASEN ANARVLELLR ELSAKLQTKI NVLVFASMLL
0701: VIAKALFSHA CEGRRRKWVF PTLVGFSTDE AANPLDGGAT RMKLTGLSPY WFDVASGTAV HNTVDMQSLF LLTGPNGGGK SSLLRSICAA ALLGICGFMV
0801: PAESAYIPHF DSIMLHMKSY DSPVDGKSSF QVEMSEIRSI VSQATSRSLV LIDEICRGTE TAKGTCIAGS VIESLDASGC LGIVSTHLHG IFDLPLTAKN
0901: VTYKAMGAEN VEGQTKPTWK LTDGVCRESL AFETAKREGV PETIIQRAEA LYISVYAKDA SFGVVRPNKT ETSSDNEISK PVRSERSLEK DLAKAILKIC
1001: GIKMNEPVGL ECLSIGAREL PPPSTVGSSC VYVMKRPDKR LYIGQTDDLE GRIRAHRAKE GLQGSSFLYL VVQGKSMACQ LETLLINQLH EQGYSLANLA
1101: DGKHRNFGTS SSLTASDVVS IS

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.