Factsheet for Bra035923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59535	Canola	cytosol	84.31	92.81
CDX76575	Canola	cytosol	84.31	92.81
VIT_00s0229g00200.t01	Wine grape	cytosol	78.43	83.33
Bra035922.1-P	Field mustard	cytosol	91.5	82.84
Bra035921.1-P	Field mustard	cytosol	75.82	31.02
GSMUA_Achr8P08030_001	Banana	cytosol	39.87	20.47
Bra021052.1-P	Field mustard	cytosol	97.39	18.81
KRH28123	Soybean	cytosol	77.78	14.99
TraesCS2B01G198300.1	Wheat	cytosol	75.82	14.37
Os07t0486000-02	Rice	cytosol	74.51	14.29
TraesCS2A01G171900.1	Wheat	cytosol	75.16	14.2
EER99382	Sorghum	cytosol	73.86	14.07
Zm00001d006382_P004	Maize	cytosol	76.47	13.85
HORVU2Hr1G031870.17	Barley	cytosol	74.51	13.84
Bra001709.1-P	Field mustard	nucleus	12.42	2.03
Bra028373.1-P	Field mustard	mitochondrion, plastid	14.38	1.98
Bra000896.1-P	Field mustard	plastid	15.69	1.8
Bra019156.1-P	Field mustard	plastid	12.42	1.75
Bra035777.1-P	Field mustard	cytosol	9.15	1.66
Bra022693.1-P	Field mustard	plastid	5.88	1.12
Bra015033.1-P	Field mustard	mitochondrion	7.19	0.98
Bra022497.1-P	Field mustard	plastid	3.92	0.68
Bra028327.1-P	Field mustard	extracellular, vacuole	0.0	0.0
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.420.110	MapMan:35.1	EnsemblPlantsGene:Bra035923	EnsemblPlants:Bra035923.1	EnsemblPlants:Bra035923.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030983	InterPro:IPR036678	UniProt:M4F4C3	InterPro:MutS_con_dom_sf	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21
UniParc:UPI0002542025	:	:	:	:	:

Description

AT4G17380 (E=9e-074) MSH4, ATMSH4 | MSH4 (MUTS HOMOLOG 4); ATP binding / damaged DNA binding / mismatched DNA binding

Coordinates

chrA09:+:2889178..2889976

Molecular Weight (calculated)

16910.3 Da

IEP (calculated)

4.905

GRAVY (calculated)

0.161

Length

153 amino acids

Sequence
(BLAST)

001: MEDDGGERSS FVVGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT NTLLRFYDPC VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW CLHPELFFCF ITL

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.