CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0486000-02	Rice	cytosol	88.67	89.22
TraesCS2A01G171900.1	Wheat	cytosol	88.79	88.02
TraesCS2B01G198300.1	Wheat	cytosol	88.29	87.86
HORVU2Hr1G031870.17	Barley	cytosol	87.67	85.44
Zm00001d006382_P004	Maize	cytosol	89.17	84.73
VIT_00s0229g00200.t01	Wine grape	cytosol	14.07	78.47
GSMUA_Achr8P08020_001	Banana	cytosol	46.58	75.71
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	73.6	74.62
Bra035923.1-P	Field mustard	cytosol	14.07	73.86
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	72.73	73.74
CDX76575	Canola	cytosol	12.7	73.38
CDY59535	Canola	cytosol	12.7	73.38
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	38.48	73.05
CDX76574	Canola	cytosol, peroxisome, plasma membrane	71.61	72.6
Bra021052.1-P	Field mustard	cytosol	71.61	72.6
KRH28123	Soybean	cytosol	71.61	72.42
Bra035922.1-P	Field mustard	cytosol	15.19	72.19
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	70.11	71.63
Bra035921.1-P	Field mustard	cytosol	30.76	66.04
OQU78247	Sorghum	cytosol	18.31	18.73
EER99643	Sorghum	nucleus	20.92	17.83
EES11671	Sorghum	plastid	22.17	16.18
KXG35601	Sorghum	mitochondrion, nucleus, plastid	21.92	13.5
KXG31683	Sorghum	mitochondrion, nucleus	20.05	13.08
OQU91528	Sorghum	plastid	11.71	11.31
EES11666	Sorghum	plastid	11.71	10.31
KXG26672	Sorghum	mitochondrion, nucleus	14.32	10.17
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.37	2.48
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	Gene3D:3.40.50.300	UniProt:C5X8J8	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	EnsemblPlants:EER99382	ProteinID:EER99382	ProteinID:EER99382.2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190	PFAM:PF05192
PIRSF:PIRSF005813	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21	SMART:SM00533	SMART:SM00534	EnsemblPlantsGene:SORBI_3002G304500
SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0003C64CAD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:67990123..68003552

Molecular Weight (calculated)

89556.2 Da

IEP (calculated)

7.461

GRAVY (calculated)

-0.121

Length

803 amino acids

Sequence
(BLAST)

001: MEGDAAGADG GGGGGGERSS FVIGLIENRA KEVGVAAFDL RSASLHLSQY IETGCSYHNT RTLLHFYDPM VVIVPPNKTA ADGMVGVSEL IDKHYPANKK
101: VTMARGCFDD TKGAGIVKSL SARDPSALGL DTYCKQYYLC LAAVTATIKW IESEKGVFIT NHSLSVTFNG SFDHMSIDST SVQTLEIIDP LHTELWGTSN
201: KKKSLFQMLK TTKTTGGARL LRANLLQPLK DIQTINARLG CLDELMSNEE LFFGLTQGLR KFPKESDKVL CHFCFKPKKV RDEVLKPANG RKSQKLISDI
301: IVLKTALDAI PFLSKVLKGA KSVLLHNIYQ TVCENPKYAN MRKRIGDVID EDVVHSRAPF VACTQECFAV KAGIDGLLDV ARRSFCDTSE AVHNLAKQYR
401: EEYNMPNLKM PYNTRQGFYF MIPQKDITDR LPNKFIQVVR HGKNIHCSSL ELASLNVRNK TAAAECFSRT ELCLEGLIDE IRGDIGILTL LAEVLCLLDM
501: IVNSFAHTIS TKPVDRYTRP EFTDDGPMAI NAGRHPILET LRTDFVPNDI FLSEASNMVL IMGPNMSGKS TYLQQICLIV ILAQIGCYVP AQFASLRVVD
601: RIFTRIGNGD NVENNSSTFM TEMKETAFIM QNVTSRSLVV VDELGRATSS SDGLAIAWSC CEYLLSVKAY TVFATHMERL SELATMYPNV KILHFEVDLR
701: NDRLDFKFRL KDGVRRVPHY GLLLARVAGI PTSVIDTSTS ITSQITEQEM TRMDANCEEY RSLQMTYQVV QRLICLKYSN HDEDYIREAL QNLKESYAAG
801: RLT

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.