Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G198300.1 | Wheat | cytosol | 95.27 | 97.27 |
| TraesCS2A01G171900.1 | Wheat | cytosol | 94.9 | 96.54 |
| Os07t0486000-02 | Rice | cytosol | 86.89 | 89.72 |
| EER99382 | Sorghum | cytosol | 85.44 | 87.67 |
| VIT_00s0229g00200.t01 | Wine grape | cytosol | 13.84 | 79.17 |
| Zm00001d006382_P004 | Maize | cytosol | 80.1 | 78.11 |
| GSMUA_Achr8P08020_001 | Banana | cytosol | 46.24 | 77.13 |
| Solyc08g007330.2.1 | Tomato | cytosol, peroxisome, plastid | 73.3 | 76.26 |
| PGSC0003DMT400032552 | Potato | cytosol, peroxisome, plastid | 38.84 | 75.65 |
| Bra035923.1-P | Field mustard | cytosol | 13.84 | 74.51 |
| AT4G17380.1 | Thale cress | cytosol, nucleus, plasma membrane | 71.6 | 74.49 |
| CDX76575 | Canola | cytosol | 12.5 | 74.1 |
| CDY59535 | Canola | cytosol | 12.5 | 74.1 |
| Bra021052.1-P | Field mustard | cytosol | 70.87 | 73.74 |
| CDX76574 | Canola | cytosol, peroxisome, plasma membrane | 70.75 | 73.61 |
| KRH28123 | Soybean | cytosol | 70.75 | 73.43 |
| Bra035922.1-P | Field mustard | cytosol | 15.05 | 73.37 |
| CDY59530 | Canola | endoplasmic reticulum, nucleus, peroxisome | 69.66 | 73.03 |
| Bra035921.1-P | Field mustard | cytosol | 29.98 | 66.04 |
| HORVU2Hr1G085940.21 | Barley | cytosol | 21.36 | 20.16 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 15.05 | 19.62 |
| HORVU1Hr1G030930.22 | Barley | plastid | 21.24 | 17.55 |
| HORVU5Hr1G061020.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 19.9 | 15.86 |
| HORVU6Hr1G000990.1 | Barley | cytosol | 2.18 | 11.76 |
| HORVU6Hr1G001030.1 | Barley | cytosol | 2.18 | 11.76 |
| HORVU2Hr1G118740.5 | Barley | plastid | 10.68 | 10.08 |
| HORVU2Hr1G087660.5 | Barley | plastid | 14.2 | 9.97 |
| HORVU1Hr1G047640.7 | Barley | plastid | 10.56 | 9.97 |
| KRG88723 | Soybean | cytosol, extracellular, mitochondrion, nucleus | 0.36 | 2.48 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:13.3.6.5.1.2.1 | Gene3D:3.30.420.110 | Gene3D:3.40.50.300 | UniProt:A0A287HL77 | InterPro:DNA_mismatch_repair_Msh2 |
| InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_clamp | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 |
| EnsemblPlantsGene:HORVU2Hr1G031870 | EnsemblPlants:HORVU2Hr1G031870.17 | InterPro:IPR036678 | InterPro:MutS_con_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00488 |
| PFAM:PF05190 | PFAM:PF05192 | PIRSF:PIRSF005813 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF21 | SMART:SM00533 |
| SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | UniParc:UPI000B465A22 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr2H:+:121673809..121685079
Molecular Weight (calculated)
91358.3 Da
IEP (calculated)
7.563
GRAVY (calculated)
-0.060
Length
824 amino acids
Sequence
(BLAST)
(BLAST)
001: RTHQLAAVVA SSQGSAQEMD EGAAGRGGGG GVVAAGDRSS FVIGLIENRA KEVGVAAFDL RSASLHLSQY IETSCSYQNT KTLLHFYDPN TVIVPPNKTA
101: ADGMVGVSEL VDKNYQASKK VTMARGCFDD TKVGAAIVKN LSARDPSALG LDTYCKQYYL CLAAASATIK WIESEKGVII TNHSLSVTFN GSFDHMNIDS
201: TSVQTLEIID PLHTELWGTS NKKKSLFQML KTTKTTGGSR LLRANLLQPL KDIHTINTRL DCLDELVSNE ELFFGLTQGL RKFPKESDKV LCHFCFKPKK
301: VTDEVLKPAD GRKSQLLISD IIVLKTALDA IPFLSKVLKG ANSFLLQNIY QTICENPKYG SMRKRIREVI DEDVIHSRAP FVACTQQCFA IKPGVDGLLD
401: VARRSFCDTS EAIHNLATKY REEFTLPNLK IPYNNRLGFY FIIPQRDITE KLPNKFIQVV RHGKNVHCSS FELASLNVRN KSAAAECFLR TELCLEGLIS
501: EIREDICILT LLAEVLCLLD MIVNSFAYTI STKPVDRYTR PEFTDDGPMA INAGRHPILE SLHTDFVPNN IFLSEASNMV LVMGPNMSGK STYLQQICLI
601: VILAQVGCYV PAQFASLRVV DRIFTRIGTG DNVENNSSTF MTEMKETAFI MQNVSSRSLV VVDELGRATS SSDGLAIAWS CCEHLLSLKG YTVFATHMEG
701: LSELATMYPN VKVLHFEVDL RNSRLDFKFL LKDGLRRVPH YGLLLARVAG LPASVIDTAT SITSRITEQE MVRMDANCVQ YKPLRMAYQA AQRLICLKYS
801: NQGDDYNREA LQDLKESYAA GNLI
101: ADGMVGVSEL VDKNYQASKK VTMARGCFDD TKVGAAIVKN LSARDPSALG LDTYCKQYYL CLAAASATIK WIESEKGVII TNHSLSVTFN GSFDHMNIDS
201: TSVQTLEIID PLHTELWGTS NKKKSLFQML KTTKTTGGSR LLRANLLQPL KDIHTINTRL DCLDELVSNE ELFFGLTQGL RKFPKESDKV LCHFCFKPKK
301: VTDEVLKPAD GRKSQLLISD IIVLKTALDA IPFLSKVLKG ANSFLLQNIY QTICENPKYG SMRKRIREVI DEDVIHSRAP FVACTQQCFA IKPGVDGLLD
401: VARRSFCDTS EAIHNLATKY REEFTLPNLK IPYNNRLGFY FIIPQRDITE KLPNKFIQVV RHGKNVHCSS FELASLNVRN KSAAAECFLR TELCLEGLIS
501: EIREDICILT LLAEVLCLLD MIVNSFAYTI STKPVDRYTR PEFTDDGPMA INAGRHPILE SLHTDFVPNN IFLSEASNMV LVMGPNMSGK STYLQQICLI
601: VILAQVGCYV PAQFASLRVV DRIFTRIGTG DNVENNSSTF MTEMKETAFI MQNVSSRSLV VVDELGRATS SSDGLAIAWS CCEHLLSLKG YTVFATHMEG
701: LSELATMYPN VKVLHFEVDL RNSRLDFKFL LKDGLRRVPH YGLLLARVAG LPASVIDTAT SITSRITEQE MVRMDANCVQ YKPLRMAYQA AQRLICLKYS
801: NQGDDYNREA LQDLKESYAA GNLI
001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL
Arabidopsis Description
MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [cytosol,nucleus,plasma membrane]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.