Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G198300.1 | Wheat | cytosol | 98.77 | 99.13 |
| HORVU2Hr1G031870.17 | Barley | cytosol | 96.54 | 94.9 |
| Os07t0486000-02 | Rice | cytosol | 89.38 | 90.73 |
| EER99382 | Sorghum | cytosol | 88.02 | 88.79 |
| VIT_00s0229g00200.t01 | Wine grape | cytosol | 14.2 | 79.86 |
| Zm00001d006382_P004 | Maize | cytosol | 82.72 | 79.29 |
| GSMUA_Achr8P08020_001 | Banana | cytosol | 47.16 | 77.33 |
| Solyc08g007330.2.1 | Tomato | cytosol, peroxisome, plastid | 74.69 | 76.39 |
| PGSC0003DMT400032552 | Potato | cytosol, peroxisome, plastid | 39.26 | 75.18 |
| Bra035923.1-P | Field mustard | cytosol | 14.2 | 75.16 |
| CDX76575 | Canola | cytosol | 12.84 | 74.82 |
| CDY59535 | Canola | cytosol | 12.84 | 74.82 |
| AT4G17380.1 | Thale cress | cytosol, nucleus, plasma membrane | 72.72 | 74.37 |
| KRH28123 | Soybean | cytosol | 72.22 | 73.68 |
| CDX76574 | Canola | cytosol, peroxisome, plasma membrane | 71.98 | 73.61 |
| Bra021052.1-P | Field mustard | cytosol | 71.98 | 73.61 |
| Bra035922.1-P | Field mustard | cytosol | 15.31 | 73.37 |
| CDY59530 | Canola | endoplasmic reticulum, nucleus, peroxisome | 70.62 | 72.77 |
| Bra035921.1-P | Field mustard | cytosol | 30.62 | 66.31 |
| TraesCS1A01G135100.1 | Wheat | nucleus | 21.36 | 18.04 |
| TraesCS1A01G315900.1 | Wheat | cytosol | 17.78 | 17.6 |
| TraesCS3A01G117500.1 | Wheat | mitochondrion, nucleus | 20.0 | 13.26 |
| TraesCS5A01G206300.1 | Wheat | mitochondrion | 20.49 | 12.59 |
| TraesCS2A01G362100.1 | Wheat | mitochondrion, nucleus | 14.57 | 10.46 |
| TraesCS2A01G588000.2 | Wheat | plastid | 11.73 | 10.37 |
| TraesCS1A01G179700.1 | Wheat | plastid | 10.49 | 10.22 |
| KRG88723 | Soybean | cytosol, extracellular, mitochondrion, nucleus | 0.37 | 2.48 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:13.3.6.5.1.2.1 | Gene3D:3.30.420.110 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_Msh2 | InterPro:DNA_mismatch_repair_MutS_C |
| InterPro:DNA_mismatch_repair_MutS_clamp | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 | InterPro:IPR036678 |
| InterPro:MutS_con_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF05190 | PFAM:PF05192 | PIRSF:PIRSF005813 |
| PANTHER:PTHR11361 | PANTHER:PTHR11361:SF21 | SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 |
| EnsemblPlantsGene:TraesCS2A01G171900 | EnsemblPlants:TraesCS2A01G171900.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:-:127206749..127217440
Molecular Weight (calculated)
89692.6 Da
IEP (calculated)
7.674
GRAVY (calculated)
-0.038
Length
810 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGAAGVGG GVGGGGVAGA GAGDRSSFVI GLIENRAKEV GVAAFDLRSA SLHLSQYIET SCSYHNTKTL LHFYDPNTVI VPPNKTAADG MVGVSELVDK
101: NYQASKKVTM ARGCFDDTKG AVMVKNLSAR DPSALGLDTY CKQYYLCLAA ASATIKWIES EKGVIITNHS LSVTFNGSFD HMNIDSTSVQ TLEIIDPLHT
201: ELWGTSNKKK SLFQMLKTTK TTGGSRLLRA NLLQPLKDIQ TINARLDCLD ELVSNEELFF GLTQGLRKFP KESDKVLCHF CFKPKKVTDE VLKPANGRKS
301: QLLISDIIVL KTALDAIPFL SKVLKGANSF LLQNIYQTIC ENPKYGSMRK RIGEVIDEDV IHSRAPFVAC TQQCFAIKPG IDGLLDVARR SFCDTSEAIH
401: NLATKYREEF TLPNLKIPYN NRLGFYFIIP QRDITEKLPN KFIQVVRHGK NVHCSSFELA SLNVRNKSAA AECFLRTELC LEGLISEIRE DIRILTMLAE
501: VLCLLDMIVN SFAYTISTKP VDRYTRPEFT GDGPMAINAG RHPILECLHT DFVPNNIFLS EASNMVLVMG PNMSGKSTYL QQICLIVILA QVGCYVPAQF
601: ASLRVVDRIF TRIGTGDNVE NNSSTFMTEM KETAFIMQNV SSRSLVVVDE LGRATSSSDG LAIAWSCCEH LLSLKGYTVF ATHMEGLSEL ATMYPNVKIL
701: HFEVDLRNGR LDFKFRLKDG VRRVPHYGLL LARVAGLPAS VIDTATSITS RITEQEMVRM DANCVQYQPL RMAYQAVQRL ICLKYSNQGD DYIREALQDL
801: KESYAAGNLI
101: NYQASKKVTM ARGCFDDTKG AVMVKNLSAR DPSALGLDTY CKQYYLCLAA ASATIKWIES EKGVIITNHS LSVTFNGSFD HMNIDSTSVQ TLEIIDPLHT
201: ELWGTSNKKK SLFQMLKTTK TTGGSRLLRA NLLQPLKDIQ TINARLDCLD ELVSNEELFF GLTQGLRKFP KESDKVLCHF CFKPKKVTDE VLKPANGRKS
301: QLLISDIIVL KTALDAIPFL SKVLKGANSF LLQNIYQTIC ENPKYGSMRK RIGEVIDEDV IHSRAPFVAC TQQCFAIKPG IDGLLDVARR SFCDTSEAIH
401: NLATKYREEF TLPNLKIPYN NRLGFYFIIP QRDITEKLPN KFIQVVRHGK NVHCSSFELA SLNVRNKSAA AECFLRTELC LEGLISEIRE DIRILTMLAE
501: VLCLLDMIVN SFAYTISTKP VDRYTRPEFT GDGPMAINAG RHPILECLHT DFVPNNIFLS EASNMVLVMG PNMSGKSTYL QQICLIVILA QVGCYVPAQF
601: ASLRVVDRIF TRIGTGDNVE NNSSTFMTEM KETAFIMQNV SSRSLVVVDE LGRATSSSDG LAIAWSCCEH LLSLKGYTVF ATHMEGLSEL ATMYPNVKIL
701: HFEVDLRNGR LDFKFRLKDG VRRVPHYGLL LARVAGLPAS VIDTATSITS RITEQEMVRM DANCVQYQPL RMAYQAVQRL ICLKYSNQGD DYIREALQDL
801: KESYAAGNLI
001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL
Arabidopsis Description
MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.