Factsheet for PGSC0003DMT400032552

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, plastid

Predictor Summary:

plastid 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	98.35	52.53
KRH28123	Soybean	cytosol	78.96	42.07
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	78.01	41.98
Bra021052.1-P	Field mustard	cytosol	77.54	41.41
CDX76574	Canola	cytosol, peroxisome, plasma membrane	77.54	41.41
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	77.07	41.16
Os07t0486000-02	Rice	cytosol	75.65	40.1
TraesCS2B01G198300.1	Wheat	cytosol	75.41	39.53
TraesCS2A01G171900.1	Wheat	cytosol	75.18	39.26
HORVU2Hr1G031870.17	Barley	cytosol	75.65	38.84
EER99382	Sorghum	cytosol	73.05	38.48
Zm00001d006382_P004	Maize	cytosol	67.38	33.73
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	12.06	25.37
PGSC0003DMT400021699	Potato	cytosol	8.04	21.38
PGSC0003DMT400010422	Potato	cytosol	28.61	12.83
PGSC0003DMT400057653	Potato	plastid	15.37	9.39
PGSC0003DMT400001555	Potato	cytosol	2.13	4.57
GSMUA_Achr8P08030_001	Banana	cytosol	1.42	2.01
VIT_00s0229g00200.t01	Wine grape	cytosol	0.47	1.39
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.24	0.83

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_sf
GO:GO:0000003	GO:GO:0000166	GO:GO:0000794	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0007049	GO:GO:0007129
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0010777	GO:GO:0016043
GO:GO:0030983	GO:GO:0043073	GO:GO:0045143	UniProt:M1AXL9	InterPro:P-loop_NTPase	PFAM:PF00488
PFAM:PF05190	EnsemblPlantsGene:PGSC0003DMG400012503	PGSC:PGSC0003DMG400012503	EnsemblPlants:PGSC0003DMT400032552	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21
SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI000296A533	:	:

Description

DNA mismatch repair protein mutS [Source:PGSC_GENE;Acc:PGSC0003DMG400012503]

Coordinates

chr8:+:580621..588125

Molecular Weight (calculated)

47886.2 Da

IEP (calculated)

8.295

GRAVY (calculated)

-0.117

Length

423 amino acids

Sequence
(BLAST)

001: MARRSFCDTS EAIHSLANKY RQDFKLPNLK IPFNNRQGFY FSIPQKDIQG KLPSKFIQVV KHGNNVHCSS LELASLNVRN KSAAKECWLR TAFCLEALMD
101: AIREDVSVLT VLAEVLCLLD MMVNSFAHTI STKPVDRYTR ARFTCDGPLA IDSGRHPILE SIHNDFIPNG IFLSEASNMA IVMGPNMSGK STYLQQVCLM
201: IILAQIGCYI PARFATLRVV DRIFTRMGTM DSLESNSSTF MTEMKETAFI MQNVSHRSLI VMDELGRATS SSDGFAIAWS CCEHLLALKA YSIFATHMEN
301: LSALSTMYPN VKTLHFDVDV RNNRMDFKFQ LKDGSRHVPH YGLMLAGVAG LPSSVVETAK RITSRITEKE MKRMEVNCRQ YEDVQLIYRV AQRLMCLKYS
401: DQDEDSLREA LQNLKESYIG GRL

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.