Factsheet for VIT_00s0229g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76575	Canola	cytosol	77.78	80.58
CDY59535	Canola	cytosol	77.78	80.58
Bra035923.1-P	Field mustard	cytosol	83.33	78.43
Bra035922.1-P	Field mustard	cytosol	83.33	71.01
Bra035921.1-P	Field mustard	cytosol	64.58	24.87
GSMUA_Achr8P08030_001	Banana	cytosol	40.97	19.8
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	85.42	15.53
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	83.33	15.15
KRH28123	Soybean	cytosol	82.64	14.99
TraesCS2B01G198300.1	Wheat	cytosol	80.56	14.37
TraesCS2A01G171900.1	Wheat	cytosol	79.86	14.2
Os07t0486000-02	Rice	cytosol	78.47	14.16
EER99382	Sorghum	cytosol	78.47	14.07
HORVU2Hr1G031870.17	Barley	cytosol	79.17	13.84
Zm00001d006382_P004	Maize	cytosol	79.86	13.61
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	9.03	2.77
VIT_00s0229g00210.t01	Wine grape	endoplasmic reticulum, golgi	4.86	2.69
VIT_00s0388g00030.t01	Wine grape	plastid	9.03	2.65
VIT_19s0090g00670.t01	Wine grape	cytosol	11.81	2.14
VIT_11s0016g04090.t01	Wine grape	nucleus	15.28	1.96
VIT_07s0005g01370.t01	Wine grape	plastid	16.67	1.85
VIT_16s0100g01310.t01	Wine grape	plastid	13.19	1.71
VIT_17s0000g04170.t01	Wine grape	cytosol	10.42	1.59
VIT_05s0049g02090.t01	Wine grape	mitochondrion	6.94	0.87
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	3.47	0.61
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	1.39	0.47
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.420.110	MapMan:35.1	ProteinID:CCB60310	ProteinID:CCB60310.1	UniProt:F6I044	EMBL:FN596504
GO:GO:0000003	GO:GO:0000166	GO:GO:0000795	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0007049
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0051026	InterPro:IPR036678	InterPro:MutS_con_dom_sf
PANTHER:PTHR11361	PANTHER:PTHR11361:SF21	UniParc:UPI000210A7B8	ArrayExpress:VIT_00s0229g00200	EnsemblPlantsGene:VIT_00s0229g00200	EnsemblPlants:VIT_00s0229g00200.t01

Description

No Description!

Coordinates

chrUn:+:15555021..15563131

Molecular Weight (calculated)

16106.4 Da

IEP (calculated)

7.402

GRAVY (calculated)

0.056

Length

144 amino acids

Sequence
(BLAST)

001: MEDDGRERSS FVIGLIENRA KEVGVAAFDL RLASLHLSQY IETSSSYQNT KTLLHFYDPM VIIVSPNKLA PDGMVGVSEL VDRFYFAVKK VVMARSCFDD
101: TKGAVLIKNL AAKEPSALGL DTYYKQYYLC LAAAAATIKW YFQT

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.