Factsheet for VIT_00s0229g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 4
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g00670.t01	Wine grape	cytosol	15.0	4.92
VIT_00s0229g00200.t01	Wine grape	cytosol	2.69	4.86
VIT_17s0000g04170.t01	Wine grape	cytosol	17.31	4.76
VIT_16s0100g01310.t01	Wine grape	plastid	17.31	4.05
VIT_11s0016g04090.t01	Wine grape	nucleus	12.69	2.94
VIT_07s0005g01370.t01	Wine grape	plastid	13.08	2.62
VIT_05s0049g02090.t01	Wine grape	mitochondrion	9.62	2.19
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	2.31	1.28
VIT_00s0388g00030.t01	Wine grape	plastid	2.31	1.22
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	3.46	1.1

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100254854	wikigene:100254854	MapMan:13.3.6.5.1.2.1	ProteinID:CCB60311	ProteinID:CCB60311.1
InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	UniProt:F6I045	EMBL:FN596504	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006298	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0030983	GO:GO:0032300	EntrezGene:LOC100254854
wikigene:LOC100254854	PFAM:PF05190	PFAM:PF05192	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21	SUPFAM:SSF48334
TMHMM:TMhelix	UniParc:UPI000210A7B9	ArrayExpress:VIT_00s0229g00210	EnsemblPlantsGene:VIT_00s0229g00210	EnsemblPlants:VIT_00s0229g00210.t01	RefSeq:XP_002262998
RefSeq:XP_002262998.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:15563160..15568387

Molecular Weight (calculated)

29670.4 Da

IEP (calculated)

9.486

GRAVY (calculated)

0.003

Length

260 amino acids

Sequence
(BLAST)

001: MQCFTTAFSF SLPFSFFFTV CFGTRLLRAN LLQPLKDIET INARLDCLDE LMSNEQLFFG LSQVLRKFPK ETDRVLCHFC FKPKKVTKEV LGVEYARKNQ
101: MLISSIILLK TALDALPLLS KVLKDAKSFL LANVYKSVCA NETYASIRKR IGEVIDEDVL HARVPFVART QQCFAVKAGI DGLLDIARRS FCDTSEAIHN
201: LANKYREDFK LPNLKLPFNN RQGFYFTIPQ KDIQGKLPSK FIQVLRHGNN IHCSTLELAS

Best Arabidopsis Sequence Match ( AT4G17380.2 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKVLS
701: VFLSYEFETL GTAAECYIVL ISFNCEMEPY MFHIMAFY

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.