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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:mitochondrion
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG96523 Soybean plastid 68.23 69.52
Solyc01g079520.2.1 Tomato plastid 67.93 67.15
AT4G02070.1 Thale cress plastid 65.84 64.5
CDX91808 Canola mitochondrion, nucleus, plastid 65.23 64.04
Bra000896.1-P Field mustard plastid 65.61 63.65
CDX90956 Canola plastid 65.54 63.58
GSMUA_Achr5P24510_001 Banana nucleus, plastid 60.29 61.33
HORVU5Hr1G061020.11 Barley endoplasmic reticulum, golgi, plasma membrane 46.88 58.8
KXG35601 Sorghum mitochondrion, nucleus, plastid 57.44 57.13
Zm00001d020424_P002 Maize nucleus, plastid 56.28 56.33
TraesCS5D01G212500.1 Wheat nucleus 49.42 56.33
TraesCS5A01G206300.1 Wheat mitochondrion 55.2 54.28
Os09t0407600-01 Rice mitochondrion, nucleus, plastid 28.53 52.04
VIT_11s0016g04090.t01 Wine grape nucleus 25.75 29.72
VIT_16s0100g01310.t01 Wine grape plastid 22.59 26.37
VIT_17s0000g04170.t01 Wine grape cytosol 17.35 23.81
VIT_00s0485g00020.t01 Wine grape mitochondrion, plastid 8.1 22.34
VIT_00s0388g00030.t01 Wine grape plastid 8.25 21.84
VIT_19s0090g00670.t01 Wine grape cytosol 12.88 21.06
VIT_00s0229g00200.t01 Wine grape cytosol 1.85 16.67
VIT_16s0098g00680.t01 Wine grape cytosol, plastid 9.95 15.77
VIT_05s0049g02090.t01 Wine grape mitochondrion 13.57 15.38
VIT_00s0229g00210.t01 Wine grape endoplasmic reticulum, golgi 2.62 13.08
Protein Annotations
Gene3D:1.10.1420.10EntrezGene:100255608wikigene:100255608MapMan:14.7.1.3Gene3D:3.30.420.110Gene3D:3.40.1170.10
Gene3D:3.40.50.300ProteinID:CCB60009ProteinID:CCB60009.1ncoils:CoilInterPro:DNA_mismatch_repair_MSH6_CInterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS/MSHInterPro:DNA_mismatch_repair_MutS_CInterPro:DNA_mismatch_repair_MutS_NInterPro:DNA_mismatch_repair_MutS_clampInterPro:DNA_mismatch_repair_MutS_coreInterPro:DNA_mismatch_repair_MutS_sf
InterPro:DNA_mmatch_repair_MutS_con_domUniProt:F6HZ94EMBL:FN596502GO:GO:0000166GO:GO:0000404GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0003824GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006259GO:GO:0006281
GO:GO:0006298GO:GO:0006950GO:GO:0006974GO:GO:0008094GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0030983GO:GO:0032300GO:GO:0043570
InterPro:IPR016151InterPro:IPR036678EntrezGene:LOC100255608wikigene:LOC100255608InterPro:MutS_con_dom_sfInterPro:P-loop_NTPase
PFAM:PF00488PFAM:PF01624PFAM:PF05188PFAM:PF05190PFAM:PF05192PIRSF:PIRSF037677
PANTHER:PTHR11361PANTHER:PTHR11361:SF31SMART:SM00533SMART:SM00534SUPFAM:SSF48334SUPFAM:SSF52540
SUPFAM:SSF53150SUPFAM:SSF55271UniParc:UPI0001983B0BArrayExpress:VIT_07s0005g01370EnsemblPlantsGene:VIT_07s0005g01370EnsemblPlants:VIT_07s0005g01370.t01
unigene:Vvi.16429RefSeq:XP_002275930RefSeq:XP_002275930.1SEG:seg::
Description
No Description!
Coordinates
chr7:-:3883914..3893367
Molecular Weight (calculated)
144013.0 Da
IEP (calculated)
6.919
GRAVY (calculated)
-0.433
Length
1297 amino acids
Sequence
(BLAST)
0001: MAPTRRMSNG RSPLVNQQSQ ITAFFSKTSS SPSPSPVLSK QDLNPKPSPS PSPSPSPTTP SPVQAKLRKP LLVIGPSKTT SPSTPVTGSK SYGEEVVNRR
0101: VKVYWPLDKS WYVGCVKSFD ELTGEHLVQY DDADEETLDL GKEKIEWVED KGRSLRRLRR GSVFEKGVVP VGEANVEEES GGDDSSDEDW GKGKGREEVE
0201: DDSEDVEFEE EEDEEEEVEG PKKGQSKKVD PKKRKAVGEG TMGSGKRRKS SGGAEKNTFK VSSVEPMKNA ESRKASDILD NVLPGDALER FGAREAEKLP
0301: FLGGERKDAK RRCPGDANYD PRTLYLPPNF LKNLTGGQRQ WWEFKSRHMD KVIFFKMGKF YELFEMDAHI GAKELDLQYM KGGQPHCGFP EKNFSINVEK
0401: LARKGYRVLV VEQTETPEQL ELRRKEKGSK DKVVKREICA VVTKGTLTEG EMLSANPDAS YLMAVTESCQ FEERSFGVCV VDVATSRIIL GQFRDDSECS
0501: TLCCLLSELR PVEIIKPANL LSPETERALM RHTRSPLVNE LVPISEFWDS KKTVSEIRSV YRCFNDLSVS GSLNEANLSV KGSFVEEDPL GLPDILSKLV
0601: NAGESGSLAL SALGGTLFYL KQAFMDETLL RFAKFELFPY SGVSDIFHKP YMVLDAAALE NLEIFENSRK GDSSGTLYAQ LNHCVTAFGK RLLKTWLARP
0701: LYHLDSIRER QDAVAGLRGV NLPSALEFRK ELSRLPDMER LLARIFASSE ANGRNANKVV FYEDAAKKQL QEFISALRGC ELMTQACSSL GVILENVESG
0801: LLHHLLTPGK GLPDIHSVIN HFKEAFDWVE ANNSGRIIPH EGVDKEYDSA CKTVKEIELR LKKHLKEQQK LLGDASINFV TIGKEAYLLE VPESLRGNIP
0901: RDYELRSSKK GFFRYWTPNI KKFLGELSHA ESEKESKLRS ILQRLISRFC EHHDKWRQLV SSTAELDVLI SLAIANDYYE GPTCRPVISG LSNSNEVPCF
1001: TAKSLGHPVL RSDSLGKGTF VPNDITIGGS DHACFILLTG PNMGGKSTLL RQVCLAVILA QVGADVPAES FELSPVDRIF VRMGAKDNIM AGQSTFLTEL
1101: SETASMLTSA TCNSLVALDE LGRGTSTSDG QAIAESVLEH FVHKVRCRGM FSTHYHRLAV DYKKNSKVSL CHMACQVGKG VGGVEEVTFL YRLRPGACPK
1201: SYGVNVARLA GLPNSVLQKA AAKSREIEGI YGRHRKGSDD GCDERLSSQN SEDDVVFFIQ SLINGVAKLS YHKSFKDIHA SSLSDLQQRA RIFLDQN
Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)
0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN
Arabidopsis Description
MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.