Factsheet for Zm00001d020424_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35601	Sorghum	mitochondrion, nucleus, plastid	92.21	91.64
HORVU5Hr1G061020.11	Barley	endoplasmic reticulum, golgi, plasma membrane	60.26	75.53
TraesCS5D01G212500.1	Wheat	nucleus	65.12	74.17
TraesCS5A01G206300.1	Wheat	mitochondrion	73.84	72.56
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	39.2	71.45
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	58.95	59.92
VIT_07s0005g01370.t01	Wine grape	plastid	56.33	56.28
KRG96523	Soybean	plastid	54.4	55.38
Solyc01g079520.2.1	Tomato	plastid	54.4	53.73
AT4G02070.1	Thale cress	plastid	54.55	53.4
CDX91808	Canola	mitochondrion, nucleus, plastid	53.94	52.91
Bra000896.1-P	Field mustard	plastid	54.01	52.36
CDX90956	Canola	plastid	54.01	52.36
Zm00001d039596_P004	Maize	nucleus	23.69	24.78
Zm00001d000329_P002	Maize	cytosol	8.02	22.76
Zm00001d022028_P005	Maize	nucleus	14.97	21.8
Zm00001d026647_P005	Maize	nucleus	20.45	19.81
Zm00001d006382_P004	Maize	cytosol	12.5	19.17
Zm00001d025816_P002	Maize	mitochondrion, nucleus	13.35	15.15
Zm00001d029152_P001	Maize	plastid	6.71	13.51
Zm00001d001806_P001	Maize	plastid	9.1	13.1
Zm00001d013887_P002	Maize	plastid	7.41	11.25
Zm00001d001787_P003	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.3	Gene3D:2.30.30.140	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
UniProt:A0A1D6I437	ncoils:Coil	InterPro:DNA_mismatch_repair_MSH6_C	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	InterPro:IPR002999	InterPro:IPR016151	InterPro:IPR036678
InterPro:Lamin-B_rcpt_of_tudor	InterPro:MutS_con_dom_sf	ProteinID:ONM54904.1	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624
PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PFAM:PF09465	PIRSF:PIRSF037677	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF31	SMART:SM00333	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334
SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271	SUPFAM:SSF63748	InterPro:Tudor	UniParc:UPI0008445B7F
EnsemblPlantsGene:Zm00001d020424	EnsemblPlants:Zm00001d020424_P002	EnsemblPlants:Zm00001d020424_T002	SEG:seg	:	:

Description

mismatch binding protein Mus3 mismatch binding protein Mus3

Coordinates

chr7:+:113218224..113228485

Molecular Weight (calculated)

144282.0 Da

IEP (calculated)

7.054

GRAVY (calculated)

-0.477

Length

1296 amino acids

Sequence
(BLAST)

0001: MASRRASNGR SPLVRKQSQI TAFFSSPTPS PSPSGPSPGA SKPSPSPLNP SARTRSPLAA VSPSSPKLPQ PQQKQKEVKK VKEEHDAALV PAPAAAEVVG
0101: RCLRVYWPLD DAWYKGKVEA YDAASRRHRV KYDDGDEEEV DLRKEKFEWA AVVEESTLLP ARKLRRLRRM SDISVAKSPA EAEDGAGDST EDEDWKRDTV
0201: VEDASEEVEL DEEDEEEVVA VRSRKRNPKN SLMSGSTPST LGSGLTSESE PRISKRRKNV DVASLDFAKR FTFEAVNTNR KVDPEVPMSC GQKGQTTGND
0301: YTAPTGDAAE RFGQRDAEKF KFLGEGRKDA KGRRPGNPGF DPRTLLLPPQ FLKNLTGGQR QWWEFKSQHM DKVLFFKMGK FYELFEMDAH VGAKDLDLQY
0401: MKGEQPHCGF PEKNLSVNLE KLAEKGYRVL VVEQTETPDQ LELRRKEMGI KDKVVRREIC AVVTKGTLIE GEHLLANPDP SYLLSVTESY QRSPNKSQDT
0501: CTIGVSIVDV STSKFIVGQF QDDPERHGLC SILSEMRPVE IIKPSKMLSP ETEKALNNNT RKPLINELVP STEFWDAEKT IDEIKQYYSS ANKQKKADDI
0601: QDCVDCLPNL LRELIGAGDK TYALSALGGS LFYLRQTLLD EKILPCAEFE PLACSGFINN IRKHMILDTA ALENLELLEN TRTGGLSGTL YAQLNHCVTG
0701: FGKRLLKRWI AKPLYDRREI LRRQSAVATF KGVGQDCAAQ FRKDLSRLPD MERLLARLFS SCDENKRSSS VVLYEDASKK LLQQFTSALC GCQQMFHACS
0801: SISTLICSEG SQLIDLLSPG KGLSNISSIL DRFRDAFDWS EADRNGRIIP SEGCDPEYDA TCNAIEEIKS SLKEYLKEQR KLLRPASVNY VNVGKDMYLI
0901: EVPESLGGSV PRNYELQSTK KGFYRYWTPE LKELILELSK AESEKESKLK AILQNLIQLF VEHHTEWRQL VSVVAELDVL TSLAIASGYF EGPSCCPTIK
1001: ESNGTDDTPT FHARNLGHPI LRSDSLGKGS FVPNDVKIGG PGNASFIVLT GPNMGGKSTL LRQVCLTIIL AQIGADVPAE KLELSLVDRI FVRMGARDHI
1101: MAGQSTFLVE LEETASVLSS ATKNSLVVLD ELGRGTSTSD GQAIAASVLE YLVHQVQCLG LFSTHYHRLA MEHNDTKVSL CHMACEVVEG VGGLEEVTFL
1201: YRLTPGACPK SYGVNVARLA GIPTKLLQRA NEKSSEFEAN YGKRHKMTND KHVSAQSDDK FSAIRDLFRI VKTWPRPEDQ EASISMLRKL QKRAKV

Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)

0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN

Arabidopsis Description

MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.