Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026647_P005 | Maize | nucleus | 88.61 | 13.38 |
| Zm00001d029152_P001 | Maize | plastid | 0.5 | 0.16 |
| Zm00001d025816_P002 | Maize | mitochondrion, nucleus | 0.5 | 0.09 |
| Zm00001d039596_P004 | Maize | nucleus | 0.5 | 0.08 |
| Zm00001d000329_P002 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d001806_P001 | Maize | plastid | 0.0 | 0.0 |
| Zm00001d006382_P004 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d013887_P002 | Maize | plastid | 0.0 | 0.0 |
| Zm00001d020424_P002 | Maize | nucleus, plastid | 0.0 | 0.0 |
| Zm00001d022028_P005 | Maize | nucleus | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100273812 | MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | UniProt:B4FXL2 | EMBL:BT041850 | EMBL:BT061696 |
| InterPro:Cleav_polyA_spec_factor_su5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005849 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | InterPro:NUDIX_hydrolase-like_dom_sf | ProteinID:ONM11952.1 | ProteinID:ONM11953.1 | ProteinID:ONM11955.1 | PFAM:PF13869 |
| PIRSF:PIRSF017888 | PANTHER:PTHR13047 | SUPFAM:SSF55811 | UniParc:UPI00017B7DE9 | EnsemblPlantsGene:Zm00001d001787 | EnsemblPlants:Zm00001d001787_P003 |
| EnsemblPlants:Zm00001d001787_T003 | SEG:seg | : | : | : | : |
Description
Pre-mRNA cleavage factor Im 25 kDa subunit 2
Coordinates
chr2:+:923036..933728
Molecular Weight (calculated)
23141.3 Da
IEP (calculated)
9.541
GRAVY (calculated)
-0.250
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSSSPVVN VYPLANYTFG TKEPKMEKDT SVADRLARMK VNYMKEGMRT SVEAILLVQE HNHPHILLLQ IGNTFCKLPG GRLKPGENEI EGLKRKLCSK
101: LAVNSPSFPP NWQVGECVAV WWRPNFETVM YPYCPPHITK PKECKKLFIV HLSEREYFAV PRNLKLLAVP LFELYDNVQR YGPVISTIPQ QLSRFQFNMV
201: SS
101: LAVNSPSFPP NWQVGECVAV WWRPNFETVM YPYCPPHITK PKECKKLFIV HLSEREYFAV PRNLKLLAVP LFELYDNVQR YGPVISTIPQ QLSRFQFNMV
201: SS
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
Arabidopsis Description
CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.