Factsheet for Zm00001d013887_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91528	Sorghum	plastid	87.1	89.41
Os10t0509000-01	Rice	cytosol, nucleus	48.42	76.2
TraesCS1A01G179700.1	Wheat	plastid	71.4	73.2
TraesCS1D01G178000.1	Wheat	plastid	71.28	73.08
TraesCS1B01G200700.1	Wheat	plastid	70.81	72.95
HORVU1Hr1G047640.7	Barley	plastid	70.34	68.73
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	21.22	56.74
GSMUA_Achr1P01790_001	Banana	mitochondrion	13.72	52.47
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	43.96	45.84
KRH72584	Soybean	plastid	41.38	44.68
AT5G54090.1	Thale cress	plastid	40.68	43.59
Solyc03g080010.2.1	Tomato	plastid	42.09	43.46
CDY41773	Canola	plastid	40.45	43.07
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	27.32	43.07
CDY28796	Canola	plastid	40.21	42.77
Bra022693.1-P	Field mustard	plastid	40.09	42.64
GSMUA_Achr1P01820_001	Banana	plastid	11.14	40.43
KRH16964	Soybean	cytosol, nucleus	6.68	34.34
Zm00001d001806_P001	Maize	plastid	23.33	22.09
Zm00001d000329_P002	Maize	cytosol	6.57	12.25
Zm00001d006382_P004	Maize	cytosol	8.91	8.99
Zm00001d025816_P002	Maize	mitochondrion, nucleus	11.72	8.76
Zm00001d022028_P005	Maize	nucleus	9.03	8.65
Zm00001d039596_P004	Maize	nucleus	10.9	7.51
Zm00001d020424_P002	Maize	nucleus, plastid	11.25	7.41
Zm00001d026647_P005	Maize	nucleus	10.55	6.73
Zm00001d029152_P001	Maize	plastid	3.99	5.28
Zm00001d001787_P003	Maize	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100382240	Gene3D:3.40.50.300	MapMan:35.2	UniProt:A0A1D6GN39	ProteinID:AQK64677.1	ncoils:Coil
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0016887	GO:GO:0030983	GO:GO:0045910	GO:GO:0090305	InterPro:MutS2
InterPro:P-loop_NTPase	PFAM:PF00488	PIRSF:PIRSF005814	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF81
SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI0008456586	EnsemblPlantsGene:Zm00001d013887
EnsemblPlants:Zm00001d013887_P002	EnsemblPlants:Zm00001d013887_T002	SEG:seg	:	:	:

Description

DNA mismatch repair protein MutS type 2

Coordinates

chr5:-:23853143..23883017

Molecular Weight (calculated)

94346.5 Da

IEP (calculated)

6.002

GRAVY (calculated)

-0.216

Length

853 amino acids

Sequence
(BLAST)

001: MLRLSIAVLT SPLLPTSVPA VRPHPRRLLR LRLRSLAASS SLSPSARSLR LLEWGKVCDA VASFAGTAHG RDATTVPRSD IPGCHFSLPE YRRRGLFVSD
101: TSAVRFDMRV QKQLWEVEDV SYEQSQMLLQ ETEAAVLLLD NAGGAMDFSG LDTVAIESAI HSVSGGAVIK GLEAMAVTSL MMFVESLQVN IKAAMKLDEG
201: SCSRLTTLTE TILDAVINKS LVKSIQDIVD DDGSVKDTAS PELRRYREQV QRLENRLYQL MDKLMRNADD EASLSEVCIV NGRCCIRTTM DNSSFFDGLL
301: LSRSDAGSMI EPIVAVPLND ELQESRALVA KAELDVLSKL TDKIRLDLDS IQNLLQETIK LDKIAARAKY SIAYDGTFPD LYLPNFENET VTSATGGSIK
401: QISSAQLPKK AWKLYMPNAY HPLLLQRHQE NIHRAKRDVA SATAEIRRRR IYGQDIAEED QLASDLDSMK LRVSQLEKDQ PVPVDFMIAE ETTVLVITGP
501: NTGGKTISLK TVGLASLMAK IGNGAIRAES TSESLVLLDE VGAGTNPLEG AALGMSLLES FAEAGSFLTL ATTHHGELKT LKYSTFSNNS FENACMEFDE
601: ENLKPTFKIL WGIPGCVMFP FPFFNHFNVQ ICLGTLGRSN AINITERLGL PLDIVESSRR LLGTAGAEIN ALIMDMERLK QEYQQHLQEA QYLLMQSKEL
701: HNNLELAQKS IVDHTSAQRK RKARVISEYA VMARSIIRKK FQQFQESAIA ERVKEEENAV NDAKSDRVKD PMPANTSAIG NIQNIDTSLG MTANDDEDEV
801: PEVGDSVYVP KLKNEATVVK IDSSKNEVQV QAGMMKLKLK LKDVKVQKRK VSR

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.