Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G287700.1 | Wheat | cytosol | 36.49 | 26.58 |
Zm00001d022028_P005 | Maize | nucleus | 29.66 | 21.46 |
Zm00001d039596_P004 | Maize | nucleus | 13.04 | 6.78 |
Zm00001d020424_P002 | Maize | nucleus, plastid | 13.51 | 6.71 |
Zm00001d026647_P005 | Maize | nucleus | 12.73 | 6.13 |
Zm00001d006382_P004 | Maize | cytosol | 7.92 | 6.04 |
Zm00001d001806_P001 | Maize | plastid | 8.23 | 5.88 |
Zm00001d025816_P002 | Maize | mitochondrion, nucleus | 8.07 | 4.55 |
Zm00001d013887_P002 | Maize | plastid | 5.28 | 3.99 |
Zm00001d000329_P002 | Maize | cytosol | 2.02 | 2.84 |
Zm00001d001787_P003 | Maize | cytosol | 0.16 | 0.5 |
Protein Annotations
Gene3D:1.10.1420.10 | Gene3D:3.30.420.110 | Gene3D:3.40.1170.10 | MapMan:35.1 | UniProt:A0A1D6K341 | InterPro:DNA_mismatch_repair_MutS-lik_N |
InterPro:DNA_mismatch_repair_MutS_N | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | InterPro:DNA_mmatch_repair_MutS_con_dom | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 | GO:GO:0032300 | InterPro:IPR016151 | InterPro:IPR036678 |
InterPro:Msh2 | InterPro:MutS_con_dom_sf | ProteinID:ONL98075.1 | PFAM:PF01624 | PFAM:PF05188 | PFAM:PF05192 |
PANTHER:PTHR11361 | PANTHER:PTHR11361:SF35 | SUPFAM:SSF48334 | UniParc:UPI0008437649 | EnsemblPlantsGene:Zm00001d029152 | EnsemblPlants:Zm00001d029152_P001 |
EnsemblPlants:Zm00001d029152_T001 | SEG:seg | : | : | : | : |
Description
DNA mismatch repair protein MSH2
Coordinates
chr1:+:60781649..60788101
Molecular Weight (calculated)
72659.5 Da
IEP (calculated)
4.179
GRAVY (calculated)
-0.205
Length
644 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFRAVPIPG EIFCHPTLPY FSLDSAQIRA VGRTIFDREL FHVDLDDAPV FDADTDNLNA EPVFDDVVFE DIEPNFDDLD DEPLFDTKFD ELDKGPVFDT
101: ESIPDHVAVS VFEFVRPEYD AELTVFDTDS DSLNDLLVVD MEPVHDAELT VFNQGNDGSL TAHTGVLDGH PIFDVELVFD EEPLIEIDCS IFNTNAPFMC
201: LTDCLSYVDD MVSATFKEGP IFDKETVVEA VQKESDRDYY TVHGEKAMFI ARTYYHTISA LRHLGSNSGG ISSVGVSKAM FETIVRKILL DRTDCTLELY
301: EGSGSDWRLT KSGKPGNIGG FEDILFINND MQESPVMTNR KLGLAEFRED NRFTNVGSAL LALCLTADCE KSINSHSLQD AITKCSILLT ERKKSNFKSK
401: DLVQDLEEIK GSVKLVCDLI SQFDYSLGAL GALLSYAELL ANDTNYGNYT IEKYNLDCYM RLDSAVVLAL TIHEEKTDVN KNFYLFGLVN RTCTVEMGKR
501: LLNQWLKQPL LDVNEITSRL YMVQAAISTF DTKTTIRTVV QIHMCEPAGA SQNVEHMGQL QKPWDPGGFH IGLVSGAQRV GFNFGEYIEL LESPRFFTWA
601: VSSCTDELKI WDRNDNELKI WDRNDNELKI WDWVSAENDH VQPM
101: ESIPDHVAVS VFEFVRPEYD AELTVFDTDS DSLNDLLVVD MEPVHDAELT VFNQGNDGSL TAHTGVLDGH PIFDVELVFD EEPLIEIDCS IFNTNAPFMC
201: LTDCLSYVDD MVSATFKEGP IFDKETVVEA VQKESDRDYY TVHGEKAMFI ARTYYHTISA LRHLGSNSGG ISSVGVSKAM FETIVRKILL DRTDCTLELY
301: EGSGSDWRLT KSGKPGNIGG FEDILFINND MQESPVMTNR KLGLAEFRED NRFTNVGSAL LALCLTADCE KSINSHSLQD AITKCSILLT ERKKSNFKSK
401: DLVQDLEEIK GSVKLVCDLI SQFDYSLGAL GALLSYAELL ANDTNYGNYT IEKYNLDCYM RLDSAVVLAL TIHEEKTDVN KNFYLFGLVN RTCTVEMGKR
501: LLNQWLKQPL LDVNEITSRL YMVQAAISTF DTKTTIRTVV QIHMCEPAGA SQNVEHMGQL QKPWDPGGFH IGLVSGAQRV GFNFGEYIEL LESPRFFTWA
601: VSSCTDELKI WDRNDNELKI WDRNDNELKI WDWVSAENDH VQPM
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Arabidopsis Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.