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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
plastid: 22065420
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G287700.1 Wheat cytosol 36.49 26.58
Zm00001d022028_P005 Maize nucleus 29.66 21.46
Zm00001d039596_P004 Maize nucleus 13.04 6.78
Zm00001d020424_P002 Maize nucleus, plastid 13.51 6.71
Zm00001d026647_P005 Maize nucleus 12.73 6.13
Zm00001d006382_P004 Maize cytosol 7.92 6.04
Zm00001d001806_P001 Maize plastid 8.23 5.88
Zm00001d025816_P002 Maize mitochondrion, nucleus 8.07 4.55
Zm00001d013887_P002 Maize plastid 5.28 3.99
Zm00001d000329_P002 Maize cytosol 2.02 2.84
Zm00001d001787_P003 Maize cytosol 0.16 0.5
Protein Annotations
Gene3D:1.10.1420.10Gene3D:3.30.420.110Gene3D:3.40.1170.10MapMan:35.1UniProt:A0A1D6K341InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS_NInterPro:DNA_mismatch_repair_MutS_coreInterPro:DNA_mismatch_repair_MutS_sfInterPro:DNA_mmatch_repair_MutS_con_domGO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0006259GO:GO:0006298GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0030983GO:GO:0032300InterPro:IPR016151InterPro:IPR036678
InterPro:Msh2InterPro:MutS_con_dom_sfProteinID:ONL98075.1PFAM:PF01624PFAM:PF05188PFAM:PF05192
PANTHER:PTHR11361PANTHER:PTHR11361:SF35SUPFAM:SSF48334UniParc:UPI0008437649EnsemblPlantsGene:Zm00001d029152EnsemblPlants:Zm00001d029152_P001
EnsemblPlants:Zm00001d029152_T001SEG:seg::::
Description
DNA mismatch repair protein MSH2
Coordinates
chr1:+:60781649..60788101
Molecular Weight (calculated)
72659.5 Da
IEP (calculated)
4.179
GRAVY (calculated)
-0.205
Length
644 amino acids
Sequence
(BLAST)
001: MVFRAVPIPG EIFCHPTLPY FSLDSAQIRA VGRTIFDREL FHVDLDDAPV FDADTDNLNA EPVFDDVVFE DIEPNFDDLD DEPLFDTKFD ELDKGPVFDT
101: ESIPDHVAVS VFEFVRPEYD AELTVFDTDS DSLNDLLVVD MEPVHDAELT VFNQGNDGSL TAHTGVLDGH PIFDVELVFD EEPLIEIDCS IFNTNAPFMC
201: LTDCLSYVDD MVSATFKEGP IFDKETVVEA VQKESDRDYY TVHGEKAMFI ARTYYHTISA LRHLGSNSGG ISSVGVSKAM FETIVRKILL DRTDCTLELY
301: EGSGSDWRLT KSGKPGNIGG FEDILFINND MQESPVMTNR KLGLAEFRED NRFTNVGSAL LALCLTADCE KSINSHSLQD AITKCSILLT ERKKSNFKSK
401: DLVQDLEEIK GSVKLVCDLI SQFDYSLGAL GALLSYAELL ANDTNYGNYT IEKYNLDCYM RLDSAVVLAL TIHEEKTDVN KNFYLFGLVN RTCTVEMGKR
501: LLNQWLKQPL LDVNEITSRL YMVQAAISTF DTKTTIRTVV QIHMCEPAGA SQNVEHMGQL QKPWDPGGFH IGLVSGAQRV GFNFGEYIEL LESPRFFTWA
601: VSSCTDELKI WDRNDNELKI WDRNDNELKI WDWVSAENDH VQPM
Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Arabidopsis Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.