Factsheet for Zm00001d006382_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99382	Sorghum	cytosol	84.73	89.17
Os07t0486000-02	Rice	cytosol	79.29	83.96
TraesCS2A01G171900.1	Wheat	cytosol	79.29	82.72
TraesCS2B01G198300.1	Wheat	cytosol	78.82	82.53
HORVU2Hr1G031870.17	Barley	cytosol	78.11	80.1
VIT_00s0229g00200.t01	Wine grape	cytosol	13.61	79.86
Bra035923.1-P	Field mustard	cytosol	13.85	76.47
CDX76575	Canola	cytosol	12.31	74.82
CDY59535	Canola	cytosol	12.31	74.82
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	66.39	70.83
GSMUA_Achr8P08020_001	Banana	cytosol	40.47	69.23
Bra035922.1-P	Field mustard	cytosol	13.85	69.23
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	64.85	69.19
KRH28123	Soybean	cytosol	64.5	68.64
Bra021052.1-P	Field mustard	cytosol	64.02	68.31
CDX76574	Canola	cytosol, peroxisome, plasma membrane	63.67	67.93
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	33.73	67.38
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	62.37	67.05
Bra035921.1-P	Field mustard	cytosol	28.64	64.71
Zm00001d000329_P002	Maize	cytosol	9.23	17.07
Zm00001d022028_P005	Maize	nucleus	17.63	16.74
Zm00001d020424_P002	Maize	nucleus, plastid	19.17	12.5
Zm00001d026647_P005	Maize	nucleus	19.17	12.11
Zm00001d039596_P004	Maize	nucleus	17.16	11.7
Zm00001d025816_P002	Maize	mitochondrion, nucleus	13.37	9.89
Zm00001d013887_P002	Maize	plastid	8.99	8.91
Zm00001d001806_P001	Maize	plastid	9.23	8.66
Zm00001d029152_P001	Maize	plastid	6.04	7.92
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.36	2.48
Zm00001d001787_P003	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	Gene3D:3.40.50.300	UniProt:A0A1D6EVR7	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259
GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0030983	ProteinID:ONM23665.1	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190
PFAM:PF05192	PIRSF:PIRSF037677	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0008423DCE	EnsemblPlantsGene:Zm00001d006382	EnsemblPlants:Zm00001d006382_P004
EnsemblPlants:Zm00001d006382_T004	SEG:seg	:	:	:	:

Description

DNA mismatch repair protein MSH4

Coordinates

chr2:+:206162736..206214491

Molecular Weight (calculated)

94951.1 Da

IEP (calculated)

7.977

GRAVY (calculated)

-0.018

Length

845 amino acids

Sequence
(BLAST)

001: MEGDATGADG GGGGGSGERS SFVIGLIENR AKEVGVAAFD LRSASLHLSQ YIETSCSYHN TNTLLHFYDP MVVIVPPNKT AADGMVGVSE LIDKHYPANK
101: KVTMARGCFD DTKGAVIVRS LSARDPSALG LDTYCKQYYL CLAAATATIK WYVCSTHYDS IRNSGFQLLR LPCYGIVITF EVTFNGSFDH MSIDSTSVQT
201: LEIIDPLHTE LWGTSNKKKS LFQMLKTTKT TGGSRLLKAN LLQPLKDIQT INARLDCLDE LMSNEELFFG LTQGLRKFPK ESDKVLCHFC FKPKKVTDKV
301: LKPANGRKSQ MLISDIIVLK TALDAIPFLS KVLKGAKSFL LHNIYQTVCE NPKYANMRKS HVHIINVLLF PFGGPRIGDV IDEDVVHSRA PFVACTQQCF
401: AVKAGIDGLL DVARRSFCDT SEAIHNLAKK YRDDYNMPNL KITYNIRQGF YFIIPQKDIT DRLPNKFIQV VRHGKNLHCS SLELASLNVR NKSSAAECFS
501: RTELCLEGLI DKIRGDIAIL TLLAEVLCLL DMIVNSFAHT ISTKPVDRYT RPEFTGVQFS SCHMMVQWQS MLDDTLFLRP CILILFLTIY FSLKHLIWFL
601: SWGQICEWSG KSTYLQQICL IVILAQIGCY VPAQFASLRV LDRIFTRIGN GDNVENNSST FMTEMKETAF IMQNVSSRSL VVVDELGRAT SSSDGLAIAW
701: SCCEYLLSVK AYTVFATHME RLSELSTMYP NVKILHFEVD LRNDRLDFKF CLKDGIRRVP HYGLLLARVA GIPTSVIDTS TSITSQITEQ EMTRMNANCE
801: EYWSLQMTYQ VVQRLICLKY SNHGDDYIRE ALQNLKESYS AGRLT

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.