Factsheet for Zm00001d026647_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11671	Sorghum	plastid	75.49	91.82
Zm00001d001787_P003	Maize	cytosol	13.38	88.61
EES13125	Sorghum	cytosol	13.3	88.12
TraesCS2D01G352400.1	Wheat	cytosol	57.55	79.06
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	61.21	77.78
TraesCS2B01G372300.1	Wheat	plastid	63.3	76.72
HORVU2Hr1G085940.21	Barley	cytosol	49.78	76.29
KRH35336	Soybean	cytosol	17.94	56.47
VIT_16s0100g01310.t01	Wine grape	plastid	46.04	55.45
KRG91481	Soybean	plastid	43.65	54.58
AT4G25540.1	Thale cress	nucleus, plastid	43.12	53.38
CDY50199	Canola	plastid	42.83	53.3
CDX92716	Canola	plastid	43.5	53.3
Solyc03g025890.1.1	Tomato	nucleus	44.17	52.91
Bra019156.1-P	Field mustard	plastid	42.68	52.68
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	16.52	47.02
VIT_00s0388g00030.t01	Wine grape	plastid	16.59	45.31
Zm00001d000329_P002	Maize	cytosol	7.77	22.76
Zm00001d022028_P005	Maize	nucleus	15.1	22.7
Zm00001d020424_P002	Maize	nucleus, plastid	19.81	20.45
Zm00001d006382_P004	Maize	cytosol	12.11	19.17
Zm00001d039596_P004	Maize	nucleus	15.1	16.3
Zm00001d025816_P002	Maize	mitochondrion, nucleus	11.44	13.4
Zm00001d029152_P001	Maize	plastid	6.13	12.73
Zm00001d001806_P001	Maize	plastid	7.92	11.76
Zm00001d013887_P002	Maize	plastid	6.73	10.55

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100282369	MapMan:14.7.1.2	MapMan:16.2.1.4.1	Gene3D:3.30.420.110	Gene3D:3.40.1170.10
Gene3D:3.40.50.300	Gene3D:3.90.79.10	UniProt:A0A1D6JIG9	ProteinID:AQK47383.1	InterPro:Cleav_polyA_spec_factor_su5	InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006298	GO:GO:0006378	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PFAM:PF13869
ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF122	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334
SUPFAM:SSF52540	SUPFAM:SSF55271	UniParc:UPI000844D1F6	EnsemblPlantsGene:Zm00001d026647	EnsemblPlants:Zm00001d026647_P005	EnsemblPlants:Zm00001d026647_T005
SEG:seg	:	:	:	:	:

Description

DNA mismatch repair protein MSH3

Coordinates

chr10:-:149345948..149364298

Molecular Weight (calculated)

146604.0 Da

IEP (calculated)

8.181

GRAVY (calculated)

-0.109

Length

1338 amino acids

Sequence
(BLAST)

0001: MVSSSSSVVN VYPLANYTFG TKEPKMEKDT SVADRLARMK VNYMKEGMRT SVEAILLVQE HNHPHILLLQ IGNTFCKLPG GRLKPGENEI EGLKRKLCSK
0101: LAVNSPSFPP NWQLGQHKSL PVVKKGVHDC HFQVGECVAV WWRPNFETVM YPYCPPHITK PKECKKLFIV HLSEREYFAV PRNLKLLAVP LFELYDNIQL
0201: EARATSRKPL KTHVAVAGAP APHAPTFPAP TDQANGGHAH AMGKPKQQVL SRFFSPKPAP VLSSAAPDPP PPLPPNPKPS AAHPPVSTVA SFSPAKRARA
0301: LSLSPKSPAA KRPNPTPPPS RDAVRRRLLE PLHQEPPRLL DPTGGGKGYT PLEQQVVDLK ARHPDVLLMV EVGYRFRFFG EDAAVAAAVL GIVAHPDRSF
0401: LTASVPNFRL GFHVRRLVAA GHKVGVVRQT ETAAIKAAAR GVGGAPFSRG LSAVYTRATI EAAAGELEGG GAAAPEEGSS YLVCIVDKEV EAAGREGLQV
0501: KVGLVAIEVS TGEVVHGEFL DSDSRSGLEA LLLGLAPVEV ILGTPLSFAT EKIMMAYVGP TSNVRVERVS CEWFGKDAAL AELITLFEKS VNNASRAEDD
0601: RKLIETNDDN NNFHGIEGIM AMPELVVQAL ALSVRYLKGF GMERIICFGS SFRPFSADAE FSLSANALQQ LEVFRNNSDG TTEGSLFQIM NNTCTSFGSR
0701: LLRNWLTRPL CNRHLICARH DAVSEIFESM GPQHSVNNLQ DGGDRSCTAS VLSDLCIVLS SVLALLGRSP DIQRGISRIF HCKATAKEFV GVIQSILTSG
0801: KQLQKLVLED IGIVSSPHKS VHSPLLRRLI NTASSSTILN SAVKLLSCLN KDAADQGDML NLFIASVDQF PEVAEGHVNV KMAEHKLDLL IVEYRKQFAM
0901: HNLEFKTVAG TTHLIELPVD RRVPSNWIKI NSTKKAIRYH TPEILKNLDK LLLAKEELAV ICRSMWHKFL TDFGKYYAQF QAVVESLAAL DCLYSLAVLA
1001: KQNNYIRPIF VHDNEPSQIH IKDGRHPVLE SLLGDNFVPN DTELHADGEY CQIVTGPNMG GKSCYIRQVA LITMMAQVGS FVPASSAMLH VVDGIYTRMG
1101: ASDSIQQGIS TFHEEMNEAS NILHNCSSRS LVIIDELGRG TSTHDGVAIA YSTLHYLLKE KKCIVIFVTH YPKILDIQRE FEGSVGAYHV SYLATRKLLE
1201: VTDKQVETSP EANDLGEIIF LYKLVAGASD RSFGLNVALL AQLPSRCIKR ASVMAAKLQE ELSPREEIKL RRTTDAQTVD GPSESSAEVG LFCAHPYQRL
1301: AETCRRILLN ITLAQSNNDV TNTLPSLKNA QEIAQKTI

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.