Factsheet for Zm00001d022028_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99643	Sorghum	nucleus	94.49	89.28
CDY40145	Canola	cytosol, extracellular, plastid	7.75	82.14
Os05t0274200-01	Rice	cytosol	86.29	81.53
TraesCS1D01G131600.3	Wheat	nucleus	84.16	79.51
TraesCS1A01G135100.1	Wheat	nucleus	84.16	78.1
TraesCS1B01G149700.3	Wheat	nucleus	84.04	77.59
HORVU1Hr1G030930.22	Barley	plastid	81.24	72.52
GSMUA_Achr6P13490_001	Banana	cytosol	52.81	71.32
VIT_17s0000g04170.t01	Wine grape	cytosol	70.9	66.77
KRH03809	Soybean	nucleus	69.1	65.29
Solyc06g069230.2.1	Tomato	cytosol	68.2	64.37
PGSC0003DMT400010422	Potato	cytosol	67.87	64.05
AT3G18524.1	Thale cress	nucleus	64.27	61.05
Bra001709.1-P	Field mustard	nucleus	63.6	60.41
CDX82340	Canola	nucleus	63.6	60.41
CDY52899	Canola	nucleus	63.37	60.19
GSMUA_Achr6P13480_001	Banana	cytosol	16.29	56.42
Bra028327.1-P	Field mustard	extracellular, vacuole	8.99	48.48
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	9.78	43.28
PGSC0003DMT400021699	Potato	cytosol	5.96	33.33
Zm00001d029152_P001	Maize	plastid	21.46	29.66
Zm00001d000329_P002	Maize	cytosol	9.66	18.82
Zm00001d006382_P004	Maize	cytosol	16.74	17.63
Zm00001d026647_P005	Maize	nucleus	22.7	15.1
Zm00001d020424_P002	Maize	nucleus, plastid	21.8	14.97
Zm00001d039596_P004	Maize	nucleus	18.43	13.24
Zm00001d025816_P002	Maize	mitochondrion, nucleus	13.6	10.6
Zm00001d001806_P001	Maize	plastid	10.45	10.32
Zm00001d013887_P002	Maize	plastid	8.65	9.03
Zm00001d001787_P003	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.1	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	UniProt:A0A1D6IIM1
InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	GO:GO:0032300	InterPro:IPR016151	InterPro:IPR036678
InterPro:Msh2	InterPro:MutS_con_dom_sf	ProteinID:ONM59332.1	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624
PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF35	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0008457635
EnsemblPlantsGene:Zm00001d022028	EnsemblPlants:Zm00001d022028_P005	EnsemblPlants:Zm00001d022028_T005	:	:	:

Description

MutS homolog1 MutS homolog1

Coordinates

chr7:-:168269022..168278683

Molecular Weight (calculated)

99158.5 Da

IEP (calculated)

5.077

GRAVY (calculated)

-0.216

Length

890 amino acids

Sequence
(BLAST)

001: MEGDDFTPEG GKLPEFKLDA RQAQGFISFF KKLPQDPRAV RLFDRRDYYT AHGENATFIA RTYYHTMSAL RQLGSSSDGI LSASVSKAMF ETIARNILLE
101: RTDCTLELYE GSGSNWRLTK SGTPGNIGSF EDILFANNDM EDSPVIVALF PACRESQLYV GLSFLDMTNR KLGLAEFPED SRFTNVESAL VALGCKECLL
201: PADCEKSIDL NPLQDVISNC NVLLTEKKKA DFKSRDLAQD LGRIIRGSVE PVRDLLSQFD YALGPLGALL SYAELLADDT NYGNYTIEKY NLNCYMRLDS
301: AAVRALNIAE GKTDVNKNFS LFGLMNRTCT VGMGKRLLNR WLKQPLLDVN EINNRLDMVQ AFVEDPELRQ GLRQQLKRIS DIDRLTHSLR KKSANLQPVV
401: KLYQSCSRIP YIKGILQQYN GQFSTLIRSK FLEPLEEWMA KNRFGRFSSL VETAIDLAQL ENGEYRISPL YSSDLGVLKD ELSVVENHIN NLHVDTASDL
501: DLSVDKQLKL EKGSLGHVFR MSKKEEQKVR KKLTGSYLII ETRKDGVKFT NSKLKNLSDQ YQALFGEYTS CQKKVVGDVV RVSGTFSEVF ENFAAVLSEL
601: DVLQSFADLA TSCPVPYVRP DITASDEGDI VLLGSRHPCL EAQDGVNFIP NDCTLVRGKS WFQIITGPNM GGKSTFIRQN QVGVNVLMAQ VGSFVPCDQA
701: SISVRDCIFA RVGAGDCQLH GVSTFMQEML ETASILKGAS DKSLIIIDEL GRGTSTYDGF GQCCIAFLVF LLQVEPGACD QSFGIHVAEF ANFPEAVVAL
801: AKSKAAELED FSTTPTFSDD LKDEVGSKRK RVFSPDDITR GAARARLFLE EFAALPMDEM DGSKILEMAT KMKADLQKDA ADNPWLQQFF

Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)

001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL

Arabidopsis Description

MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.