Factsheet for Zm00001d039596_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31683	Sorghum	mitochondrion, nucleus	88.46	89.03
TraesCS3D01G119400.1	Wheat	mitochondrion	70.38	71.36
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	70.38	71.36
TraesCS3B01G136600.1	Wheat	mitochondrion	70.22	71.19
Os01t0180600-01	Rice	mitochondrion, nucleus	70.3	71.16
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	49.07	54.58
Solyc07g018350.2.1	Tomato	nucleus	35.03	53.51
VIT_11s0016g04090.t01	Wine grape	nucleus	47.94	52.85
CDY25338	Canola	plastid	45.36	51.09
CDY47171	Canola	mitochondrion, nucleus	45.04	51.05
Bra028373.1-P	Field mustard	mitochondrion, plastid	45.6	50.95
AT3G24495.1	Thale cress	mitochondrion	45.2	50.5
KRH39265	Soybean	mitochondrion	43.5	49.95
KRH48416	Soybean	cytosol	43.18	47.39
Zm00001d020424_P002	Maize	nucleus, plastid	24.78	23.69
Zm00001d022028_P005	Maize	nucleus	13.24	18.43
Zm00001d006382_P004	Maize	cytosol	11.7	17.16
Zm00001d000329_P002	Maize	cytosol	6.21	16.85
Zm00001d026647_P005	Maize	nucleus	16.3	15.1
Zm00001d025816_P002	Maize	mitochondrion, nucleus	12.67	13.75
Zm00001d029152_P001	Maize	plastid	6.78	13.04
Zm00001d013887_P002	Maize	plastid	7.51	10.9
Zm00001d001806_P001	Maize	plastid	7.75	10.65
Zm00001d001787_P003	Maize	cytosol	0.08	0.5

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	UniProt:A0A1D6MJA6
InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf
ProteinID:ONM29401.1	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05192
PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF121	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271	UniParc:UPI0008428A1C	EnsemblPlantsGene:Zm00001d039596
EnsemblPlants:Zm00001d039596_P004	EnsemblPlants:Zm00001d039596_T004	SEG:seg	:	:	:

Description

MutS homolog2 MutS homolog2

Coordinates

chr3:+:8649713..8661900

Molecular Weight (calculated)

136713.0 Da

IEP (calculated)

8.276

GRAVY (calculated)

-0.246

Length

1239 amino acids

Sequence
(BLAST)

0001: MEPRRRQQQQ SILSFLQKQP PSWRDPSGEG TPPEKPPRPP MGSVAGIMER LVRPPPPPQA SHGWARNQYD SQVRHSEGKN LPVENQVLSN ECLGALFSRP
0101: IYGEHSRTIL SPEGGADMSP SQEPQKHSLR SSTDESTRAT KEVILEHPKK LFSESHTNCI HATALNENFG VQTPSQVASK KIFPGLAHGA DTPLTGYGSE
0201: QTLLQHSSKK FSLVSANGKY TRAAVTPFEQ NSNNTRAEEL SKMRSGSSDM LYLKPTNLSA ELETNGTPLK NHSKNSSLLM DGKYNITSAA LFPELDSSPL
0301: KPETPAMQAA IPRLKRVQED QGVDANNQCP PLWAMNKKMK SAHCSIEKKD HDEMAGSARS KFEWLNSFAI RDANKRRPND PLYDKSTLFI PPDALRKMST
0401: SQKQYWNIKC KYMDVVLFFK VGKFYELYEL DAEIGQKELD WKMTVSGVGK CRQVGISESG IDDAVDKLIA RGYKVGRIEQ MESANQAKAR GVHSVIERKL
0501: VHVSTPSTAV DNIGTDAVHL LALKEVTLAS SGFQVFGFAF LDYAALKIWV GSVQDDDSSA ALGALLMQVS PRELIYETSG QNTLHFQILV FVGANSYSLL
0601: SGISKETQRT IRKYASAGSV KMQLTPLSGI DFSDAAQIRN LIHSKGFFNA STESWLSALD CTMNQDVVIC ALGGLIGHLT RLMLHDALKN GEVLPYHVYK
0701: TCLRMDGQTL VNLEIFSNNF NGGSSGTLYK HLNHCVTASG KRMLRRWICH PLKDIDAINK RLDVVEGFIQ NCGLGPTTLG YLQKIPDLER LLGQVRSTVG
0801: LSSLLQLPFI GEKIIKKRIK TFIMLINGLR NGIDLLNDLQ RADHGILALY KIVDIPSLSY LPELIHKFEE RMQNEFPCGQ VSDVNANGAN DLAALMDVFI
0901: GKASEWSLVI NAVSTIDVLR SFAAMTLSSF GAMCRPQVLL KDDVPVLRMK GLWHPYAFAG NANSLVPNDL TLGQDLSGLN RFALLLTGPN MGGKSTIMRA
1001: TCLAVVLAQL GCYVPCTSCE LTLADSIFTR LGATDRIMTG ESTFLVECTE TASVLQKATV DSLVLLDELG RGTSTFDGYA IAYAVFRHLV ERVRCRQLFA
1101: THYHSLTKEF ASHPHVSLQH MACMFKPRSD GNGQKELTFL YRLTSGACPE SYGLQVAAMA GIPKSIVEKA SVAGQVMRAK IAGNFKSSEQ RAEFSTLHEE
1201: WLRAALAVSA MDGQPDDDDV MDTLFCIQQE LKSHFRKAR

Best Arabidopsis Sequence Match ( AT3G24495.1 )
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Arabidopsis Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.