Factsheet for Solyc07g018350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g04090.t01	Wine grape	nucleus	67.45	48.67
KRH39265	Soybean	mitochondrion	62.15	46.71
KRH48416	Soybean	cytosol	62.52	44.91
AT3G24495.1	Thale cress	mitochondrion	61.16	44.73
Bra028373.1-P	Field mustard	mitochondrion, plastid	60.3	44.09
CDY25338	Canola	plastid	59.8	44.09
CDY47171	Canola	mitochondrion, nucleus	59.31	44.01
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	58.08	42.28
TraesCS3D01G119400.1	Wheat	mitochondrion	55.12	36.58
TraesCS3B01G136600.1	Wheat	mitochondrion	55.12	36.58
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	55.12	36.58
Os01t0180600-01	Rice	mitochondrion, nucleus	55.12	36.52
KXG31683	Sorghum	mitochondrion, nucleus	54.01	35.58
Zm00001d039596_P004	Maize	nucleus	53.51	35.03
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	21.21	21.72
Solyc01g079520.2.1	Tomato	plastid	31.81	19.66
Solyc06g069230.2.1	Tomato	cytosol	22.56	19.41
Solyc03g025890.1.1	Tomato	nucleus	24.78	17.99
Solyc10g018540.1.1	Tomato	cytosol	7.15	16.91
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	9.99	15.85
Solyc03g080010.2.1	Tomato	plastid	11.96	11.74
Solyc09g090890.1.1	Tomato	extracellular	1.97	11.11
Solyc02g078390.2.1	Tomato	plastid	12.33	11.03
Solyc09g090870.2.1	Tomato	mitochondrion	14.67	10.47

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom
GO:GO:0000166	GO:GO:0000404	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0032300
GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678	UniProt:K4CCP6	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF121	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	EnsemblPlantsGene:Solyc07g018350.2	EnsemblPlants:Solyc07g018350.2.1	UniParc:UPI000276C3D2	SEG:seg	:

Description

DNA mismatch repair protein MSH7 [Source:Projected from Arabidopsis thaliana (AT3G24495) UniProtKB/Swiss-Prot;Acc:Q9SMV7]

Coordinates

chr7:+:10375455..10394223

Molecular Weight (calculated)

89360.8 Da

IEP (calculated)

7.094

GRAVY (calculated)

-0.056

Length

811 amino acids

Sequence
(BLAST)

001: MPKRKTRYNK QISFEDRCNT LGGSGRISQP RCNLFLGLWL RFVSGNLGMY KVGRMEQLET SEQAKSRGST SVIRRKLVHV LTPSTTSEGN IGPDAVHLLA
101: VKETCKELGN GSTTIGFAFV DCAALKVWVG SVEDDASCAA LEALLMQVSP KEVIFNARGL SKDAQKALKK YSSTGPAAPL LSPVQPGADF VDPAEVKNFL
201: DLKGYFKRSC NKWDHAFDGE DHDVALCALG SLVNHLERLM LNEVLHNGDI LSYEVYKGCL KMDGQTLVNL EIFNNNVDGS PSGTLYRYLD NCVTLPGKRL
301: LRKWICHPLK DVEKINHRLD VVDKLVDNAT LSTAQYLRKL PDLDRLLGRV KASIQSSEAL LLPLIGAKIL KQRIKVFGLL VKGLRVGLDL LRLLQKECLT
401: ASLAKVVSLP VLDGDNGLDK FLTQFEAAID SDFPNFQDHN ATDFDTETLS ILMELFIEKA TEWSQLIYAI SCVDVLRSFS ITAKFSSGVM CRPVILPLSK
501: PSNICNDTGG STLNIKGLWH PYALGESGGL PVPNDLHLGG NTNIRYPRTL LLTGPNMGGK STLLRASCLA VIMAQLGCYV PGETCVLSLV DIIFTRLGAT
601: DRIMTGESTF FIECTETASV LQNATYNSLV LLDELGRGTS TFDGYAIAYA VFRHLVETVN CRLLFATHYH PLTKEFASHP HVALQHMACS FKLKSQSSSP
701: TEQELVFLYR LTSGACPESY GMQVALMAGI PKTVVESALS AAQVMKKMNR ESFKSSEQRA NFSTLHEQWF TTLLDISKTD GGLNSDNDDD NDLFDTLFCL
801: WHELKADRST C

Best Arabidopsis Sequence Match ( AT3G24495.1 )
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Arabidopsis Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.