Factsheet for Solyc10g018530.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 1
endoplasmic reticulum 3
extracellular 2
vacuole 3
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29480_001	Banana	cytosol	50.88	70.08
TraesCS1B01G328200.1	Wheat	cytosol	66.54	64.15
Zm00001d000329_P002	Maize	cytosol	56.56	63.24
HORVU1Hr1G066830.9	Barley	cytosol	65.95	53.32
VIT_19s0090g00670.t01	Wine grape	cytosol	74.76	48.17
AT3G20475.1	Thale cress	cytosol	70.06	44.36
CDY65220	Canola	cytosol	68.3	43.52
KRH73763	Soybean	cytosol	68.88	43.46
KRH14375	Soybean	cytosol	68.88	43.35
OQU78247	Sorghum	cytosol	66.14	43.06
TraesCS1D01G316200.1	Wheat	cytosol	67.12	41.98
TraesCS1A01G315900.1	Wheat	cytosol	66.54	41.56
CDY19637	Canola	cytosol	69.08	41.48
Os05t0498300-01	Rice	cytosol	65.36	41.29
Bra035777.1-P	Field mustard	cytosol	67.91	41.07
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	19.77	12.75
GSMUA_Achr6P29470_001	Banana	mitochondrion	10.96	12.5
Solyc06g069230.2.1	Tomato	cytosol	22.5	12.2
Solyc03g025890.1.1	Tomato	nucleus	22.9	10.47
Solyc07g018350.2.1	Tomato	nucleus	15.85	9.99
Solyc01g079520.2.1	Tomato	plastid	22.9	8.92
Solyc02g078390.2.1	Tomato	plastid	14.29	8.05
Solyc03g080010.2.1	Tomato	plastid	12.33	7.63
Solyc09g090870.2.1	Tomato	mitochondrion	14.68	6.6
Solyc09g090890.1.1	Tomato	extracellular	1.17	4.17
Solyc10g018540.1.1	Tomato	cytosol	1.37	2.04

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_sf
GO:GO:0000003	GO:GO:0000166	GO:GO:0000795	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0007049
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0030983	GO:GO:0051026	UniProt:K4CYX7	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190
ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF20	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc10g018530.1	EnsemblPlants:Solyc10g018530.1.1	UniParc:UPI000276C97F	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:8736013..8751868

Molecular Weight (calculated)

57332.3 Da

IEP (calculated)

4.455

GRAVY (calculated)

0.128

Length

511 amino acids

Sequence
(BLAST)

001: MQSVCALLHI SKIFEVGISG SLLEELTSLD LDIIERAGFF ISVDLAYVCE LVIGVIDVDR SKEKGYETIV KEGFCDELDE LRQIYEGLPE FLEEVLALEL
101: ARLPCMYEDK GLPSIIYLHQ IGYLMCIFNE KLGEEMLETL QDYEFAFADE EGEHRRFFYH TAKTKEMDNL LGDIYHKILD MERAITRDLV SHILQFSVHV
201: HKAVSFAAEL DCILALALVA HQNNYVRPNL TAEDLLDIRS GRHVLQEMTV DTFIPNDTNI TLEGRINIIT GPNYSGKSIY IKQVALIVFL SHIGSYVPAD
301: AATVGLTDRI FCAMGSKFMT AEQSTFMIDL HQVGIMLRHA SPRSLCLMDE FGKGTLTEDG IGLLGGTINH FVSCYDPPKV LVCTHLTEIF DSGCLLESDR
401: IKCYTMSVLS PDKGCANVED IVFLYRLVPG RALLSYGLHC AQLAGLPEEV LTRAALILDT LKNDNQVERL VSEDIVAQDQ QYKDAVEKLL ALDAQKGDLL
501: HFFEEIFANQ S

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.