Factsheet for Solyc10g018540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29470_001	Banana	mitochondrion	64.72	49.55
VIT_19s0090g00670.t01	Wine grape	cytosol	69.68	30.14
AT3G20475.1	Thale cress	cytosol	64.72	27.51
KRH14375	Soybean	cytosol	64.72	27.34
CDY65220	Canola	cytosol	63.56	27.18
KRH73763	Soybean	cytosol	63.85	27.04
TraesCS1D01G316200.1	Wheat	cytosol	62.1	26.07
TraesCS1A01G315900.1	Wheat	cytosol	61.52	25.79
Os05t0498300-01	Rice	cytosol	60.64	25.71
OQU78247	Sorghum	cytosol	57.14	24.97
Bra035777.1-P	Field mustard	cytosol	61.22	24.85
CDY19637	Canola	cytosol	61.52	24.79
HORVU1Hr1G066830.9	Barley	cytosol	29.45	15.98
Solyc07g018350.2.1	Tomato	nucleus	16.91	7.15
Solyc06g069230.2.1	Tomato	cytosol	17.2	6.26
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	13.99	6.06
Solyc03g025890.1.1	Tomato	nucleus	16.91	5.19
Solyc09g090890.1.1	Tomato	extracellular	1.75	4.17
Solyc01g079520.2.1	Tomato	plastid	15.45	4.04
TraesCS1B01G328200.1	Wheat	cytosol	4.08	2.64
Solyc09g090870.2.1	Tomato	mitochondrion	7.58	2.29
Solyc02g078390.2.1	Tomato	plastid	5.83	2.21
Solyc03g080010.2.1	Tomato	plastid	4.08	1.69
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	2.04	1.37
Zm00001d000329_P002	Maize	cytosol	1.75	1.31
GSMUA_Achr6P29480_001	Banana	cytosol	0.58	0.54

Protein Annotations

Gene3D:1.10.1420.10	MapMan:35.1	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0030983	GO:GO:0032300	UniProt:K4CYX8	PFAM:PF05192	PANTHER:PTHR11361	PANTHER:PTHR11361:SF20
SUPFAM:SSF48334	EnsemblPlantsGene:Solyc10g018540.1	EnsemblPlants:Solyc10g018540.1.1	UniParc:UPI000276C980	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:8754888..8761754

Molecular Weight (calculated)

38476.1 Da

IEP (calculated)

5.966

GRAVY (calculated)

-0.120

Length

343 amino acids

Sequence
(BLAST)

001: MEASFAHDRD GNEQSQIRSS IPELAEEEES MVYMACVMHG HRIGVSYYDA SARQLHVLEI YEDGSHDFSL VDMVKYQAKP GTIYTSTKSE ESFLAALQRS
101: DGTSDAPSVK LVKSSLFSHE QAWHRLMYLQ VTGMDDGLNI KERTAFLSSM MDVSSDVQVR ASGGLLAVLE NERIIDTLEL NECGSASVAI DCICEISLDK
201: FLKVDSAAHE ALQIFQIDKH PSHMGIGRAK EGFSVFGMMN KCVTPMGRRL LRNWFLRPIL DLDNLNRRLD TISFFLSAEE VSVSLRETLK SVKDIPRILK
301: KFNSPSSIST SADWSAFLKV DMFSSIKIST SKYLKFIIIC HLS

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.