Factsheet for Zm00001d000329_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G328200.1	Wheat	cytosol	82.28	70.94
GSMUA_Achr6P29480_001	Banana	cytosol	54.49	67.12
HORVU1Hr1G066830.9	Barley	cytosol	82.28	59.49
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	63.24	56.56
OQU78247	Sorghum	cytosol	90.59	52.74
Os05t0498300-01	Rice	cytosol	82.71	46.72
TraesCS1D01G316200.1	Wheat	cytosol	82.49	46.14
TraesCS1A01G315900.1	Wheat	cytosol	81.84	45.72
VIT_19s0090g00670.t01	Wine grape	cytosol	64.11	36.95
AT3G20475.1	Thale cress	cytosol	62.58	35.44
CDY65220	Canola	cytosol	61.93	35.29
KRH14375	Soybean	cytosol	60.39	33.99
KRH73763	Soybean	cytosol	59.96	33.83
Bra035777.1-P	Field mustard	cytosol	62.14	33.61
CDY19637	Canola	cytosol	62.36	33.49
Zm00001d022028_P005	Maize	nucleus	18.82	9.66
Zm00001d006382_P004	Maize	cytosol	17.07	9.23
GSMUA_Achr6P29470_001	Banana	mitochondrion	8.75	8.93
Zm00001d020424_P002	Maize	nucleus, plastid	22.76	8.02
Zm00001d026647_P005	Maize	nucleus	22.76	7.77
Zm00001d001806_P001	Maize	plastid	13.35	6.77
Zm00001d025816_P002	Maize	mitochondrion, nucleus	16.41	6.57
Zm00001d013887_P002	Maize	plastid	12.25	6.57
Zm00001d039596_P004	Maize	nucleus	16.85	6.21
Zm00001d029152_P001	Maize	plastid	2.84	2.02
Solyc10g018540.1.1	Tomato	cytosol	1.31	1.75
Zm00001d001787_P003	Maize	cytosol	0.0	0.0

Protein Annotations

MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	UniProt:A0A1X7YHY8	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030983	InterPro:P-loop_NTPase	PFAM:PF00488	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF20
SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0008439D10	EnsemblPlantsGene:Zm00001d000329	EnsemblPlants:Zm00001d000329_P002
EnsemblPlants:Zm00001d000329_T002	:	:	:	:	:

Description

DNA mismatch repair protein MSH5

Coordinates

chrB73V4_ctg247:+:803..19871

Molecular Weight (calculated)

51185.9 Da

IEP (calculated)

4.848

GRAVY (calculated)

0.082

Length

457 amino acids

Sequence
(BLAST)

001: MNIDLIGKAN SSITAELDYM SDLVVGVIDV QRGKEKGYET MVKEGLCDEL DELRMVYEGL PDFLEQVSDN ENASLPFSFG CRIPPLIVYV HQIGYLMCFF
101: DEKISDALLA GLPDYEFALF IFHTDMERAI IRDLVCRVLQ FIPQLTKAVN FAAELDCILS LATVAHQNNY VRPILTEDSI LEIHNGRHAL QEMTVDTFIP
201: NDTKIRDAGR INIITGPNYS GKSIYIKQVA LIVFLAHIGS FVPADSAIVG LTDRIFCAMG SKSMTTEQST FMIDLHQVGT MLRHATSRSL CLLDEFGKGT
301: LTEDGIGLLG GTISHFANYG SPPKVLLSTH LTEIFTENYL PQCEHIKCYA MSVLNPDGQT SNEDITFLYR YKVTIFLFAL QVCIVHSLLV RVPNEVVQRA
401: GIVLEDMHSK KPTRRVTSEK LTATDKQYQD AVTKLMAFDT QKGDLNSFFQ ELFPVDL

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.