Factsheet for Zm00001d001806_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11666	Sorghum	plastid	92.45	91.34
TraesCS2D01G565200.1	Wheat	plastid	75.03	73.72
TraesCS2A01G588000.2	Wheat	plastid	74.92	73.69
TraesCS2B01G595200.1	Wheat	endoplasmic reticulum, plastid, vacuole	74.14	72.77
HORVU2Hr1G118740.5	Barley	plastid	66.59	68.73
Os04t0680700-01	Rice	plastid	36.52	66.2
GSMUA_Achr7P04320_001	Banana	plastid	55.83	55.27
Solyc02g078390.2.1	Tomato	plastid	51.5	51.16
CDX91525	Canola	plastid	47.06	47.8
Bra022497.1-P	Field mustard	plastid	46.5	47.29
AT1G65070.2	Thale cress	plastid	45.84	47.15
CDY16386	Canola	plastid	46.73	35.65
Zm00001d013887_P002	Maize	plastid	22.09	23.33
PGSC0003DMT400001555	Potato	cytosol	3.44	15.74
Zm00001d000329_P002	Maize	cytosol	6.77	13.35
Zm00001d025816_P002	Maize	mitochondrion, nucleus	13.65	10.77
Zm00001d022028_P005	Maize	nucleus	10.32	10.45
Zm00001d006382_P004	Maize	cytosol	8.66	9.23
Zm00001d020424_P002	Maize	nucleus, plastid	13.1	9.1
Zm00001d029152_P001	Maize	plastid	5.88	8.23
Zm00001d026647_P005	Maize	nucleus	11.76	7.92
Zm00001d039596_P004	Maize	nucleus	10.65	7.75
KRH33415	Soybean	cytosol, extracellular, plastid	1.0	7.32
KRG88725	Soybean	nucleus	1.44	4.56
Zm00001d001787_P003	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.1370.110	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6DT05	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887
GO:GO:0030983	GO:GO:0045910	GO:GO:0090305	InterPro:IPR002625	InterPro:MutS2	ProteinID:ONM12024.1
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01713	PIRSF:PIRSF005814	ScanProsite:PS00486	PFscan:PS50828
PANTHER:PTHR11361	PANTHER:PTHR11361:SF14	SMART:SM00463	SMART:SM00533	SMART:SM00534	SUPFAM:SSF160443
SUPFAM:SSF48334	SUPFAM:SSF52540	SignalP:SignalP-noTM	InterPro:Smr_dom	InterPro:Smr_dom_sf	UniParc:UPI000220F4CA
EnsemblPlantsGene:Zm00001d001806	EnsemblPlants:Zm00001d001806_P001	EnsemblPlants:Zm00001d001806_T001	SEG:seg	:	:

Description

DNA mismatch repair protein MutS type 2

Coordinates

chr2:-:1258169..1262746

Molecular Weight (calculated)

99289.0 Da

IEP (calculated)

7.296

GRAVY (calculated)

-0.228

Length

901 amino acids

Sequence
(BLAST)

001: MAATGTLALL LPVTLSSRPS HRTRGFMQIP RRQQPRRLTA AATEASSYNL PSRSSPEAPE TRQIRLETES ALEWGGVCER LAHFTATAAG RAACEGGRVP
101: VGRSREESER LIDQTAAAVL LPTPLDFGGV EDVSALVAAA VAGRALAVRE LCAVGRSIRA VRAVFHQLKR LADEMPDGRY SSLVDILQGC DFLTELVQRI
201: EFCLDSTLSL VLDRASKKLE IIRRERRRNI EMLESLLKDT AAKIFLAGGI DNPLVTKRRS RMCVGVKASH KHLMPGGIVL SSSGSGATYF MEPQDAVELN
301: NREVKLSGEE RAEELVVLSL LTSMIADSQL KIRNLMDNVL ELDLACARGS YALWTNSVRP TFTDSYTISQ SDQCNDYSIY IEGIRHPLLL EQSLMAEEST
401: TEASEMPVPL DMWVKKNARI VVISGPNTGG KTATMKTLGL SSLMSKAGIF FPAKGRPRIP WFDQVLADIG DHQSLEHSLS TFSGHISRLR KIVEMVSKDS
501: LVLIDEIGSG TDPAEGVALS TSILKYLASR VNLAIVTTHY ADLSRLQSVD NRFENAAMEF CVETLQPTYR ILWGSTGNSN ALSIAKSIGF DQKVLDRAQE
601: WVEKLLPDKQ KERQGLLYDS LVDEKELLES QANEAASVLS QVEGLYNEIR LEADDLESRV AALRARETQK VQQELKVVKY RMDTIIKNFE AQLKNSKLEQ
701: YNSLMRKAEA ATASVVAAHQ PSEIAFDDDD ENRISFVSQV GDKVYVQGLG GETMATVVET LGEDESCMVQ YGKIKVRVKR SRIKLVQRGT NNEATTSSSV
801: KAKGRTPKQR SATTTDVSFG PVVQTSKNTV DLRGKRVSEA AFELRMAVDA CRPYQVLFVV HGMGTGAVKD CAIDVLRKHP RVARFEDESP LNYGCTVAYI
901: Q

Best Arabidopsis Sequence Match ( AT1G65070.2 )
(BLAST)

001: MNTYSPLQLI PTPIHLKSSR AASPSSLRVA SPLIIRAASS DDSQSVENQT LEVLEWRALC NQLSPFASTT MGLSATKNAE IPVGNSPEES RNLLNETSAA
101: LAAMEMMKSR GLGLSEIQDL SDIVERAVSG QLLTVRELCT VRSTLTAATS TFQKLRKAAI SDNRVTPLVD ILQGCDFKDT LQQKISFCID CNMTMILDRA
201: SEDLEIIRSE RRRNMENLDS LLKKISTKIF LAGGINKPLI TQRRSRMCVA IRATHKSLLP GGVVLSVSSS RATCFIEPKE AVELNNMEVR HANSEKAEEM
301: AILSILTSEV VMAQREILHL LDRILELDIA FARASHANWI NGVYPNVTSE HTKTPGLAVD IDSAQHPLLL GSVLGSPNGG DIFPVPVDIK VESSAKVVVI
401: SGPNTGGKTA LLKTLGLLSL MSKSGMYLPA KNCPRLPWFD LILADIGDPQ SLEQSLSTFS GHISRIRQIL DIASENSLVL LDEICSGTDP SEGVALATSI
501: LQYIKNRVNV AVVSTHYGDL SRLKDNEPRF QNAAMEFSME TLQPTFRVLW GSTGLSNALR VAKSIGFNKR ILENAHKWTE KLNPEQDVER KGSLFQSLME
601: ERNKLKLQAT KTAAFHRDLM NLYHELEHES HDLDKRERAL LKKETQKVQE DLNSAKSKME RLVAEFESQL EITQADQYNS LILKTEEAVA EIIEACCPMD
701: PDSLEEEYSD YSPQAGEKVL VTGLGDKLGT VVEEPGDDDD TVLVQHGKIR VRIKKKDIKP LPRSTSSQTS NRSLRSKRQI NMKELGSVLQ MQSEPVRIQT
801: SKNTLDLRGM RAEEAVHQLD MAISGRDSGS ILFIIHGMGA GIIKELVLER LRKNTRVSRY EQANPMNHGC TVAYIK

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:Q9SS53]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.