CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022497.1-P	Field mustard	plastid	96.84	96.95
AT1G65070.2	Thale cress	plastid	81.17	82.19
CDY16386	Canola	plastid	97.18	72.99
PGSC0003DMT400057653	Potato	plastid	42.5	54.48
Solyc02g078390.2.1	Tomato	plastid	53.1	51.93
KRH50031	Soybean	plastid	52.42	50.88
KRH20465	Soybean	cytosol	11.05	48.28
Zm00001d001806_P001	Maize	plastid	47.8	47.06
EES11666	Sorghum	plastid	48.14	46.82
GSMUA_Achr7P04320_001	Banana	plastid	47.91	46.7
TraesCS2D01G565200.1	Wheat	plastid	47.35	45.8
TraesCS2A01G588000.2	Wheat	plastid	47.01	45.52
TraesCS2B01G595200.1	Wheat	endoplasmic reticulum, plastid, vacuole	47.01	45.42
HORVU2Hr1G118740.5	Barley	plastid	43.18	43.87
Os04t0680700-01	Rice	plastid	23.68	42.25
CDY40145	Canola	cytosol, extracellular, plastid	2.59	27.38
CDY28796	Canola	plastid	24.35	26.93
CDY41773	Canola	plastid	24.13	26.72
CDX86902	Canola	cytosol	3.38	24.19
CDX95680	Canola	cytosol	2.93	19.55
CDX82340	Canola	nucleus	12.63	11.95
CDY52899	Canola	nucleus	12.63	11.95
CDX76574	Canola	cytosol, peroxisome, plasma membrane	10.15	11.36
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	9.81	11.07
CDX77432	Canola	mitochondrion	13.98	11.05
CDY49227	Canola	mitochondrion	13.87	10.94
CDY65220	Canola	cytosol	9.7	10.72
CDY19637	Canola	cytosol	9.7	10.11
CDY50199	Canola	plastid	11.84	9.77
CDX92716	Canola	plastid	11.84	9.62
CDY47171	Canola	mitochondrion, nucleus	11.84	9.61
CDX91808	Canola	mitochondrion, nucleus, plastid	14.09	9.46
CDY25338	Canola	plastid	11.72	9.45
CDX90956	Canola	plastid	13.87	9.2
CDY59535	Canola	cytosol	0.56	3.6
CDX76575	Canola	cytosol	0.56	3.6

Protein Annotations

Gene3D:3.30.1370.110	Gene3D:3.40.50.300	MapMan:35.2	GO:A0A078DQF3	EnsemblPlants:CDX91525	ProteinID:CDX91525
ProteinID:CDX91525.1	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	GO:GO:0030983
GO:GO:0045910	EnsemblPlantsGene:GSBRNA2T00152901001	InterPro:IPR002625	InterPro:MutS2	InterPro:P-loop_NTPase	PFAM:PF00488
PFAM:PF01713	PIRSF:PIRSF005814	ScanProsite:PS00486	PFscan:PS50828	PANTHER:PTHR11361	PANTHER:PTHR11361:SF14
SMART:SM00463	SMART:SM00533	SMART:SM00534	SUPFAM:SSF160443	SUPFAM:SSF48334	SUPFAM:SSF52540
InterPro:Smr_dom	InterPro:Smr_dom_sf	UniParc:UPI0004EDE142	SEG:seg	:	:

Description

BnaC02g16350D

Coordinates

chrLK031868:+:107182..110825

Molecular Weight (calculated)

97962.9 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.266

Length

887 amino acids

Sequence
(BLAST)

001: MNTLSLHLLI PTAIHLRSSR AASPSFPRAS SPSSLRITSS SNLRADDSQS IESQTLEVLE WRALCNQLSP FASTSMGLSA TKTADIPVGN SPEESRSLLD
101: ETAAALAAME AMEPRGLGLS EILDLSEVVE RAVAGQLLTV RELCAVRGTL MAASSVFEKL RRAANSDKRV TPLVKILEGC DFKTTLEHKI GFCIDSNTSV
201: ILDRASEDLE IIRSERKRNM ENLDSLLKKV STKIYRAGGI DRPTVTKRRS RMCVAIRATR KRLLPGGVVL SVSSSGATCY MEPKEAVELN NMEVRHAYSE
301: RAEEMAILSI LTSEVSAAQR GILHLLDRIL QLDVAFARAS HAKWMNGVYP KLTKTVDMDD GDITSLAVDI DSVQHPLLLG SVLGSSSNGG SLFPVPIDIK
401: VESRSKVVVI SGPNTGGKTA LLKTLGLISL MSKSGMYLPA KNRPRLPWFD LILADIGDPQ SLEQSLSTFS GHISRIRQIL NIASENSLVL LDEICSGTDP
501: SEGVALATSI LRYIKNRVNV AVVSTHYGDL SRLKDNETQF QNAAMEFSME TLQPTFRVLW GSTGESNALR VAKSIGFDGR ILEHAHEWRE RLKPEQEVER
601: KGSLFQSLVE ERNKLNLQAS KAAALHRDLM NLYRELEHES RDLEKREKAL FKKETQKVQE DLSSAKSKMQ KLVAEFKSQL ETVTADQYNS LILKTEEAVA
701: DIIEDYCPKD LLLTEEEGYT SDYSPQAGEK VIVTGLGGKL GTVVEEPGDD ETVLVQQGKM RVRVNRKDIA PLPCTKTTET PNRSLRSKRQ VSMKELGSVL
801: QMQSEPVRIQ TSKNTLDLRG MRVEEAIYQL DMAVSGRESG SILFIIHGMG TGVIKELVLE RLRKHSRVSR YEQANPMNHG CTVAYIK

Best Arabidopsis Sequence Match ( AT1G65070.2 )
(BLAST)

001: MNTYSPLQLI PTPIHLKSSR AASPSSLRVA SPLIIRAASS DDSQSVENQT LEVLEWRALC NQLSPFASTT MGLSATKNAE IPVGNSPEES RNLLNETSAA
101: LAAMEMMKSR GLGLSEIQDL SDIVERAVSG QLLTVRELCT VRSTLTAATS TFQKLRKAAI SDNRVTPLVD ILQGCDFKDT LQQKISFCID CNMTMILDRA
201: SEDLEIIRSE RRRNMENLDS LLKKISTKIF LAGGINKPLI TQRRSRMCVA IRATHKSLLP GGVVLSVSSS RATCFIEPKE AVELNNMEVR HANSEKAEEM
301: AILSILTSEV VMAQREILHL LDRILELDIA FARASHANWI NGVYPNVTSE HTKTPGLAVD IDSAQHPLLL GSVLGSPNGG DIFPVPVDIK VESSAKVVVI
401: SGPNTGGKTA LLKTLGLLSL MSKSGMYLPA KNCPRLPWFD LILADIGDPQ SLEQSLSTFS GHISRIRQIL DIASENSLVL LDEICSGTDP SEGVALATSI
501: LQYIKNRVNV AVVSTHYGDL SRLKDNEPRF QNAAMEFSME TLQPTFRVLW GSTGLSNALR VAKSIGFNKR ILENAHKWTE KLNPEQDVER KGSLFQSLME
601: ERNKLKLQAT KTAAFHRDLM NLYHELEHES HDLDKRERAL LKKETQKVQE DLNSAKSKME RLVAEFESQL EITQADQYNS LILKTEEAVA EIIEACCPMD
701: PDSLEEEYSD YSPQAGEKVL VTGLGDKLGT VVEEPGDDDD TVLVQHGKIR VRIKKKDIKP LPRSTSSQTS NRSLRSKRQI NMKELGSVLQ MQSEPVRIQT
801: SKNTLDLRGM RAEEAVHQLD MAISGRDSGS ILFIIHGMGA GIIKELVLER LRKNTRVSRY EQANPMNHGC TVAYIK

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:Q9SS53]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.