CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86902	Canola	cytosol	66.17	70.97
CDY41773	Canola	plastid	69.92	11.61
CDY28796	Canola	plastid	69.92	11.6
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	15.04	3.34
CDX91525	Canola	plastid	19.55	2.93
CDY40145	Canola	cytosol, extracellular, plastid	1.5	2.38
CDY52899	Canola	nucleus	15.79	2.24
CDY16386	Canola	plastid	19.55	2.2
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	12.78	2.16
CDX76574	Canola	cytosol, peroxisome, plasma membrane	12.78	2.15
CDX82340	Canola	nucleus	15.04	2.13
CDX77432	Canola	mitochondrion	17.29	2.05
CDY49227	Canola	mitochondrion	17.29	2.05
CDX92716	Canola	plastid	15.04	1.83
CDY50199	Canola	plastid	14.29	1.77
CDY47171	Canola	mitochondrion, nucleus	13.53	1.65
CDY25338	Canola	plastid	13.53	1.64
Solyc09g090890.1.1	Tomato	extracellular	1.5	1.39
CDY65220	Canola	cytosol	8.27	1.37
CDY19637	Canola	cytosol	8.27	1.29
CDX91808	Canola	mitochondrion, nucleus, plastid	11.28	1.14
CDX90956	Canola	plastid	11.28	1.12
CDY59535	Canola	cytosol	0.0	0.0
GSMUA_Achr8P12760_001	Banana	cytosol	0.0	0.0
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	0.0	0.0
CDX76575	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX95680	EnsemblPlantsGene:GSBRNA2T00101566001	Gene3D:3.40.50.300	ncoils:Coil	PANTHER:PTHR11361	PANTHER:PTHR11361:SF81
ProteinID:CDX95680	ProteinID:CDX95680.1	UniParc:UPI0004EEF518	MapMan:35.2	:	:

Description

BnaC03g25610D

Coordinates

chrLK031890:-:612194..613035

Molecular Weight (calculated)

15593.8 Da

IEP (calculated)

7.583

GRAVY (calculated)

-0.321

Length

133 amino acids

Sequence
(BLAST)

001: MILHPYFFLH KNEVFGMRFC DDFSTRFPTH HGNHTHITES LRCLNTSILA FEKACMEFDD LNLKPTFKIL WGVPGRSNAI NIAERLELPC DIINSARGLY
101: GSASAEINEI ILDMKRYKQD YQRLLNESHR YIR

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.