CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028373.1-P	Field mustard	mitochondrion, plastid	96.91	96.12
CDY47171	Canola	mitochondrion, nucleus	94.64	95.24
AT3G24495.1	Thale cress	mitochondrion	82.36	81.7
VIT_11s0016g04090.t01	Wine grape	nucleus	62.36	61.03
KRH39265	Soybean	mitochondrion	59.55	60.7
Solyc07g018350.2.1	Tomato	nucleus	44.09	59.8
KRH48416	Soybean	cytosol	59.36	57.84
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	55.91	55.21
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	51.55	46.4
TraesCS3B01G136600.1	Wheat	mitochondrion	51.27	46.15
KXG31683	Sorghum	mitochondrion, nucleus	51.55	46.06
Os01t0180600-01	Rice	mitochondrion, nucleus	51.09	45.91
TraesCS3D01G119400.1	Wheat	mitochondrion	51.0	45.91
Zm00001d039596_P004	Maize	nucleus	51.09	45.36
CDY40145	Canola	cytosol, extracellular, plastid	3.18	41.67
CDX91808	Canola	mitochondrion, nucleus, plastid	28.36	23.62
CDX90956	Canola	plastid	28.45	23.41
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	15.0	20.99
CDX82340	Canola	nucleus	17.73	20.81
CDY52899	Canola	nucleus	17.73	20.81
CDX76574	Canola	cytosol, peroxisome, plasma membrane	14.73	20.45
CDY50199	Canola	plastid	19.36	19.81
CDX92716	Canola	plastid	19.27	19.41
CDY65220	Canola	cytosol	11.82	16.21
CDY19637	Canola	cytosol	11.55	14.92
CDY28796	Canola	plastid	10.0	13.72
CDX76575	Canola	cytosol	1.73	13.67
CDY59535	Canola	cytosol	1.73	13.67
CDY41773	Canola	plastid	9.91	13.61
CDX95680	Canola	cytosol	1.64	13.53
CDY49227	Canola	mitochondrion	12.82	12.54
CDX77432	Canola	mitochondrion	12.55	12.3
CDX91525	Canola	plastid	9.45	11.72
CDX86902	Canola	cytosol	1.27	11.29
CDY16386	Canola	plastid	9.45	8.81

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	GO:A0A078GL46
UniProt:A0A078GL46	EnsemblPlants:CDY25338	ProteinID:CDY25338	ProteinID:CDY25338.1	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00029441001	InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF121	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	SUPFAM:SSF55271	UniParc:UPI0004EDDAD9	:	:	:

Description

BnaC01g30070DBnaC01g30070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL46]

Coordinates

chrLK032173:+:490304..495850

Molecular Weight (calculated)

121787.0 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.213

Length

1100 amino acids

Sequence
(BLAST)

0001: MQRQKSILSF FQKPSQASVP GDATSGGGGL RSAVKERGIN SDASRNVSKC VDDDVRGVDT PPEKVPRRVL PSNFKAAESA GGASSLFSSI MHKFVKVDGS
0101: ECSGERNVAP IRDSSVSKMP ESVFPERRSN NAQPQDRDYT FCVDNPRSLE DDDVLGPDTP GTRPSVPRLK RVLEDGVAFT ENKVSLFDSN KRMKLFGDRE
0201: KKEVNEGTKF EWLEPSRIRD ANRRRPDDPL YDRKTLYIPA DVFKKMSASQ KQYWSVKSEY MDVVLFFKVG KFYELYELDA ELGHKELDWK MTMSGVGKCR
0301: QVGISESGID DAVQKLLARG YKVGRIEQLE TSDQAKARGA NTIIPRKLVQ VLTPSTASEG NLGPDPVHLL AIKEVKMELE KCSTVYGFAF VDCASLRFWV
0401: GSISDDASCA ALGALLMQVS PKEVIYESKG LSRESQQALR KYTLTGSTAV QLNPLPQEMG DANACRVRNM IESSGYFRGS SESWNSAVDG LTESGIALSA
0501: LGELISHLSR LKLEDVLKNG DIHPYKVYSG CLRIDGQTMV NLEIFNNSFD GGPSGKYIFF FIGTLYKFLD NCVSPTGKRL LRNWICHPLK DIGSINKRLD
0601: VVEEFTANSE IMQITGQYLH KLPDLERLLG RIKYTVQSSA YLLPALLGKK VLKQRVKSFG QLVKGFRSGI DLLLAVQKES NMIRLLCKLC KLPILVGKSG
0701: LELFLSQFEA AIDSDFPDYQ NHDVTEENAE TLTILIDLFI EKATEWSEVI HTISCLDVLR SFTISASLSA GSMARPVIFP ESKSTIQNQE ANGPILKIQG
0801: LWHPFAVAAD GQLPVPNDLL LGEAGSSSIH PRSLLLTGPN MGGKSTLLRA TCLAVIFAQL GCYVPCQTCE LSLVDTIFTR LGASDRIMTG ESTFLVECTE
0901: AASVLQNATQ DSLVILDELG RGTSTFDGYA IAYSVFRHMV ERVKCRMLFA THYHPLTKEF SSHPRVTLKH MACAFKSRFD QEPGSCDQDL VFLYRLAEGA
1001: CPESYGLQVA LMAGIPKQVV ETASVAAQAM KRSIGENFKS SELRSEFSSL HEEWLKTLVG ISQVVDDDKA MFEEDVSDML ICLWHEIRSS CSVAQVKPMR

Best Arabidopsis Sequence Match ( AT3G24495.1 )
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Arabidopsis Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.