CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82340	Canola	nucleus	98.93	98.93
AT3G18524.1	Thale cress	nucleus	91.78	91.78
CDY40145	Canola	cytosol, extracellular, plastid	7.9	88.1
VIT_17s0000g04170.t01	Wine grape	cytosol	75.88	75.24
KRH03809	Soybean	nucleus	74.28	73.89
Solyc06g069230.2.1	Tomato	cytosol	73.21	72.75
PGSC0003DMT400010422	Potato	cytosol	73.11	72.64
GSMUA_Achr6P13480_001	Banana	cytosol	19.32	70.43
GSMUA_Achr6P13490_001	Banana	cytosol	47.17	67.07
Os05t0274200-01	Rice	cytosol	65.74	65.39
EER99643	Sorghum	nucleus	64.46	64.12
TraesCS1D01G131600.3	Wheat	nucleus	63.82	63.48
Zm00001d022028_P005	Maize	nucleus	60.19	63.37
TraesCS1A01G135100.1	Wheat	nucleus	63.71	62.25
TraesCS1B01G149700.3	Wheat	nucleus	63.82	62.03
HORVU1Hr1G030930.22	Barley	plastid	61.69	57.97
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	12.06	56.22
PGSC0003DMT400021699	Potato	cytosol	8.43	49.69
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	18.78	22.39
CDX76574	Canola	cytosol, peroxisome, plasma membrane	18.78	22.22
CDY65220	Canola	cytosol	17.72	20.7
CDY50199	Canola	plastid	22.63	19.72
CDY19637	Canola	cytosol	17.72	19.51
CDX92716	Canola	plastid	22.31	19.14
CDY47171	Canola	mitochondrion, nucleus	20.7	17.75
CDY25338	Canola	plastid	20.81	17.73
CDX86902	Canola	cytosol	2.24	16.94
CDX91808	Canola	mitochondrion, nucleus, plastid	22.41	15.9
CDX95680	Canola	cytosol	2.24	15.79
CDX90956	Canola	plastid	22.09	15.48
CDY41773	Canola	plastid	10.89	12.73
CDX91525	Canola	plastid	11.95	12.63
CDY28796	Canola	plastid	10.78	12.59
CDY59535	Canola	cytosol	1.81	12.23
CDX76575	Canola	cytosol	1.81	12.23
CDX77432	Canola	mitochondrion	13.77	11.5
CDY49227	Canola	mitochondrion	13.66	11.39
CDY16386	Canola	plastid	12.06	9.57

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.1	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	GO:A0A078ITW7
UniProt:A0A078ITW7	EnsemblPlants:CDY52899	ProteinID:CDY52899	ProteinID:CDY52899.1	ncoils:Coil	InterPro:DNA_mismatch_repair_Msh2
InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	GO:GO:0032300	EnsemblPlantsGene:GSBRNA2T00008072001	InterPro:IPR016151	InterPro:IPR036678
InterPro:Msh2	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188
PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF35
SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0004EDCCE9	SEG:seg

Description

BnaCnng23780DBnaCnng23780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITW7]

Coordinates

chrLK033140:+:57909..61784

Molecular Weight (calculated)

105294.0 Da

IEP (calculated)

5.705

GRAVY (calculated)

-0.268

Length

937 amino acids

Sequence
(BLAST)

001: MEGNFEETNK LPELKLDAKQ AQGFLSFFKT LPNDSRAVRF FDRKDYYTAH GENSVFIAQT YYHTTTALRQ IGSGANALSS VSISKNMFET IVRDLLLERN
101: DHTVELYEGS GSNWRLVKAG SPGNIGSFED VLFANNEMQD TPVVVSLFLS FQESRCVVGM AYVDLTRRVL GLAEFLDDSR FTNLESSLVA IGAKECIFPA
201: ESGKSNECKS LYESLERCGV MTTERSRQEF KGRDLESDLK RLVKGNIEPV RDLISGFELA TPALGALLSF SELLSDEGNY GNFTIRRYDI SGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI TMRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLVRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTSLQQYTGE FSSLISKRYI KRLEALSDAD HLGKFIDLVE YSVDLDQLEN GEYMISSSYD ATLSSLKDQK ELLEQQIHEL HKKTAIELDL
501: PVDKALKLDK AAQYGHVFRI TKKEEPKIRK KLTTQFLVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYKSC QKELVDRVVQ TVASFSEVFE ELAGMLSEMD
601: VLLSFADLAA SCPTPYCRPE VTSSDVGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGESW FQIITGPNMG GKSTFIRQVG VTVLMAQVGS FVPCDKASVS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGATDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KKAPTLFATH FHELTALAQA NSEVAGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPPSIVINNE ESGKRKSRED DAEEVSRGAA RAHKFLKEFA
901: EMPLDKMELK DSLKRLHELK EELEKDDVGC HWLKQFL

Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)

001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL

Arabidopsis Description

MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.