Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY52899 | Canola | nucleus | 91.78 | 91.78 |
Bra001709.1-P | Field mustard | nucleus | 91.36 | 91.36 |
CDX82340 | Canola | nucleus | 91.25 | 91.25 |
Bra028327.1-P | Field mustard | extracellular, vacuole | 15.26 | 86.67 |
CDY40145 | Canola | cytosol, extracellular, plastid | 7.47 | 83.33 |
VIT_17s0000g04170.t01 | Wine grape | cytosol | 75.99 | 75.34 |
KRH03809 | Soybean | nucleus | 75.13 | 74.73 |
GSMUA_Achr6P13480_001 | Banana | cytosol | 20.06 | 73.15 |
Solyc06g069230.2.1 | Tomato | cytosol | 73.43 | 72.96 |
PGSC0003DMT400010422 | Potato | cytosol | 73.32 | 72.85 |
GSMUA_Achr6P13490_001 | Banana | cytosol | 47.49 | 67.53 |
Os05t0274200-01 | Rice | cytosol | 66.92 | 66.56 |
TraesCS1D01G131600.3 | Wheat | nucleus | 65.64 | 65.29 |
EER99643 | Sorghum | nucleus | 65.31 | 64.97 |
Zm00001d022028_P005 | Maize | nucleus | 61.05 | 64.27 |
TraesCS1A01G135100.1 | Wheat | nucleus | 65.31 | 63.82 |
TraesCS1B01G149700.3 | Wheat | nucleus | 65.31 | 63.49 |
HORVU1Hr1G030930.22 | Barley | plastid | 63.39 | 59.58 |
PGSC0003DMT400021697 | Potato | cytosol, extracellular, nucleus | 12.17 | 56.72 |
PGSC0003DMT400021699 | Potato | cytosol | 8.43 | 49.69 |
AT4G17380.1 | Thale cress | cytosol, nucleus, plasma membrane | 18.25 | 21.59 |
AT3G20475.1 | Thale cress | cytosol | 17.61 | 20.45 |
AT4G25540.1 | Thale cress | nucleus, plastid | 22.52 | 19.52 |
AT3G24495.1 | Thale cress | mitochondrion | 21.77 | 18.39 |
AT4G02070.1 | Thale cress | plastid | 22.09 | 15.63 |
AT5G54090.1 | Thale cress | plastid | 10.99 | 12.94 |
AT1G65070.2 | Thale cress | plastid | 11.42 | 12.21 |
AT3G24320.1 | Thale cress | mitochondrion | 14.3 | 11.99 |
Protein Annotations
Gene3D:1.10.1420.10 | MapMan:14.7.1.1 | Gene3D:3.30.420.110 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | EntrezGene:821383 |
ProteinID:AAB82650.1 | ProteinID:AAD04176.1 | ProteinID:AEE76112.1 | EMBL:AF002706 | EMBL:AF026549 | ArrayExpress:AT3G18524 |
EnsemblPlantsGene:AT3G18524 | RefSeq:AT3G18524 | TAIR:AT3G18524 | RefSeq:AT3G18524-TAIR-G | EnsemblPlants:AT3G18524.1 | TAIR:AT3G18524.1 |
Unigene:At.10475 | ProteinID:BAB01119.1 | ncoils:Coil | InterPro:DNA_mismatch_repair_Msh2 | InterPro:DNA_mismatch_repair_MutS-lik_N | InterPro:DNA_mismatch_repair_MutS_C |
InterPro:DNA_mismatch_repair_MutS_N | InterPro:DNA_mismatch_repair_MutS_clamp | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | InterPro:DNA_mmatch_repair_MutS_con_dom | GO:GO:0000003 |
GO:GO:0000166 | GO:GO:0000400 | GO:GO:0000403 | GO:GO:0000404 | GO:GO:0000406 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005886 |
GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006290 | GO:GO:0006298 | GO:GO:0006301 |
GO:GO:0006311 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0007049 | GO:GO:0008094 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030983 |
GO:GO:0032137 | GO:GO:0032138 | GO:GO:0032300 | GO:GO:0032301 | GO:GO:0032302 | GO:GO:0043570 |
GO:GO:0045128 | InterPro:IPR016151 | InterPro:IPR036678 | Symbol:MSH2 | InterPro:Msh2 | InterPro:MutS_con_dom_sf |
RefSeq:NP_566804.3 | UniProt:O24617 | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF01624 | PFAM:PF05188 |
PFAM:PF05190 | PFAM:PF05192 | PIRSF:PIRSF005813 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF35 | SMART:SM00533 |
SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | EMBL:U87911 | UniParc:UPI000012F5ED | SEG:seg |
Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
Coordinates
chr3:-:6367941..6372685
Molecular Weight (calculated)
105509.0 Da
IEP (calculated)
6.025
GRAVY (calculated)
-0.300
Length
937 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.