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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52899 Canola nucleus 91.78 91.78
Bra001709.1-P Field mustard nucleus 91.36 91.36
CDX82340 Canola nucleus 91.25 91.25
Bra028327.1-P Field mustard extracellular, vacuole 15.26 86.67
CDY40145 Canola cytosol, extracellular, plastid 7.47 83.33
VIT_17s0000g04170.t01 Wine grape cytosol 75.99 75.34
KRH03809 Soybean nucleus 75.13 74.73
GSMUA_Achr6P13480_001 Banana cytosol 20.06 73.15
Solyc06g069230.2.1 Tomato cytosol 73.43 72.96
PGSC0003DMT400010422 Potato cytosol 73.32 72.85
GSMUA_Achr6P13490_001 Banana cytosol 47.49 67.53
Os05t0274200-01 Rice cytosol 66.92 66.56
TraesCS1D01G131600.3 Wheat nucleus 65.64 65.29
EER99643 Sorghum nucleus 65.31 64.97
Zm00001d022028_P005 Maize nucleus 61.05 64.27
TraesCS1A01G135100.1 Wheat nucleus 65.31 63.82
TraesCS1B01G149700.3 Wheat nucleus 65.31 63.49
HORVU1Hr1G030930.22 Barley plastid 63.39 59.58
PGSC0003DMT400021697 Potato cytosol, extracellular, nucleus 12.17 56.72
PGSC0003DMT400021699 Potato cytosol 8.43 49.69
AT4G17380.1 Thale cress cytosol, nucleus, plasma membrane 18.25 21.59
AT3G20475.1 Thale cress cytosol 17.61 20.45
AT4G25540.1 Thale cress nucleus, plastid 22.52 19.52
AT3G24495.1 Thale cress mitochondrion 21.77 18.39
AT4G02070.1 Thale cress plastid 22.09 15.63
AT5G54090.1 Thale cress plastid 10.99 12.94
AT1G65070.2 Thale cress plastid 11.42 12.21
AT3G24320.1 Thale cress mitochondrion 14.3 11.99
Protein Annotations
Gene3D:1.10.1420.10MapMan:14.7.1.1Gene3D:3.30.420.110Gene3D:3.40.1170.10Gene3D:3.40.50.300EntrezGene:821383
ProteinID:AAB82650.1ProteinID:AAD04176.1ProteinID:AEE76112.1EMBL:AF002706EMBL:AF026549ArrayExpress:AT3G18524
EnsemblPlantsGene:AT3G18524RefSeq:AT3G18524TAIR:AT3G18524RefSeq:AT3G18524-TAIR-GEnsemblPlants:AT3G18524.1TAIR:AT3G18524.1
Unigene:At.10475ProteinID:BAB01119.1ncoils:CoilInterPro:DNA_mismatch_repair_Msh2InterPro:DNA_mismatch_repair_MutS-lik_NInterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_NInterPro:DNA_mismatch_repair_MutS_clampInterPro:DNA_mismatch_repair_MutS_coreInterPro:DNA_mismatch_repair_MutS_sfInterPro:DNA_mmatch_repair_MutS_con_domGO:GO:0000003
GO:GO:0000166GO:GO:0000400GO:GO:0000403GO:GO:0000404GO:GO:0000406GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0003824GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005886
GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006290GO:GO:0006298GO:GO:0006301
GO:GO:0006311GO:GO:0006950GO:GO:0006974GO:GO:0007049GO:GO:0008094GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0016787GO:GO:0030983
GO:GO:0032137GO:GO:0032138GO:GO:0032300GO:GO:0032301GO:GO:0032302GO:GO:0043570
GO:GO:0045128InterPro:IPR016151InterPro:IPR036678Symbol:MSH2InterPro:Msh2InterPro:MutS_con_dom_sf
RefSeq:NP_566804.3UniProt:O24617InterPro:P-loop_NTPasePFAM:PF00488PFAM:PF01624PFAM:PF05188
PFAM:PF05190PFAM:PF05192PIRSF:PIRSF005813PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022ScanProsite:PS00486PANTHER:PTHR11361PANTHER:PTHR11361:SF35SMART:SM00533
SMART:SM00534SUPFAM:SSF48334SUPFAM:SSF52540EMBL:U87911UniParc:UPI000012F5EDSEG:seg
Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
Coordinates
chr3:-:6367941..6372685
Molecular Weight (calculated)
105509.0 Da
IEP (calculated)
6.025
GRAVY (calculated)
-0.300
Length
937 amino acids
Sequence
(BLAST)
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.