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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 3
  • mitochondrion 2
  • cytosol 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50199 Canola plastid 84.27 84.74
CDX92716 Canola plastid 85.57 84.71
Bra019156.1-P Field mustard plastid 84.83 84.59
VIT_16s0100g01310.t01 Wine grape plastid 65.31 63.55
KRG91481 Soybean plastid 61.89 62.52
KRH35336 Soybean cytosol 24.33 61.88
Solyc03g025890.1.1 Tomato nucleus 62.44 60.43
VIT_00s0485g00020.t01 Wine grape mitochondrion, plastid 25.44 58.51
VIT_00s0388g00030.t01 Wine grape plastid 25.81 56.94
TraesCS2D01G352400.1 Wheat cytosol 49.68 55.13
TraesCS2B01G372400.1 Wheat mitochondrion, plastid 52.82 54.23
HORVU2Hr1G085940.21 Barley cytosol 43.76 54.18
EES11671 Sorghum plastid 54.02 53.09
TraesCS2B01G372300.1 Wheat plastid 53.84 52.72
Zm00001d026647_P005 Maize nucleus 53.38 43.12
AT3G18524.1 Thale cress nucleus 19.52 22.52
AT3G20475.1 Thale cress cytosol 15.91 21.31
AT4G02070.1 Thale cress plastid 24.98 20.39
AT3G24495.1 Thale cress mitochondrion 20.26 19.75
AT4G17380.1 Thale cress cytosol, nucleus, plasma membrane 14.43 19.7
AT5G54090.1 Thale cress plastid 10.27 13.94
AT3G24320.1 Thale cress mitochondrion 14.06 13.6
AT1G65070.2 Thale cress plastid 9.53 11.76
EES13125 Sorghum cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.1420.10MapMan:14.7.1.2Gene3D:3.30.420.110Gene3D:3.40.1170.10Gene3D:3.40.50.300EntrezGene:828659
ProteinID:AEE85075.1EMBL:AJ007791ArrayExpress:AT4G25540EnsemblPlantsGene:AT4G25540RefSeq:AT4G25540TAIR:AT4G25540
RefSeq:AT4G25540-TAIR-GEnsemblPlants:AT4G25540.1TAIR:AT4G25540.1Unigene:At.506ProteinID:CAA18172.1ncoils:Coil
InterPro:DNA_mismatch_repair_MutS-lik_NInterPro:DNA_mismatch_repair_MutS/MSHInterPro:DNA_mismatch_repair_MutS_CInterPro:DNA_mismatch_repair_MutS_NInterPro:DNA_mismatch_repair_MutS_clampInterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sfInterPro:DNA_mmatch_repair_MutS_con_domGO:GO:0000166GO:GO:0000404GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003684GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006259
GO:GO:0006281GO:GO:0006298GO:GO:0006950GO:GO:0006974GO:GO:0008094GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0030983GO:GO:0032300
GO:GO:0043570InterPro:IPR016151InterPro:IPR036678Symbol:MSH3InterPro:MutS_con_dom_sfRefSeq:NP_194284.2
UniProt:O65607InterPro:P-loop_NTPasePFAM:PF00488PFAM:PF01624PFAM:PF05188PFAM:PF05190
PFAM:PF05192PIRSF:PIRSF037677PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281ScanProsite:PS00486
PANTHER:PTHR11361PANTHER:PTHR11361:SF122SMART:SM00533SMART:SM00534SUPFAM:SSF48334SUPFAM:SSF52540
SUPFAM:SSF53150SUPFAM:SSF55271UniParc:UPI000012F5F2SEG:seg::
Description
MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
Coordinates
chr4:-:13042455..13048262
Molecular Weight (calculated)
119373.0 Da
IEP (calculated)
7.045
GRAVY (calculated)
-0.138
Length
1081 amino acids
Sequence
(BLAST)
0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.