CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026647_P005	Maize	nucleus	88.12	13.3
KXG26672	Sorghum	mitochondrion, nucleus	0.5	0.09
KXG31683	Sorghum	mitochondrion, nucleus	0.5	0.08
KXG35601	Sorghum	mitochondrion, nucleus, plastid	0.0	0.0
Bra019156.1-P	Field mustard	plastid	0.0	0.0
VIT_16s0100g01310.t01	Wine grape	plastid	0.0	0.0
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	0.0	0.0
VIT_00s0388g00030.t01	Wine grape	plastid	0.0	0.0
TraesCS2D01G352400.1	Wheat	cytosol	0.0	0.0
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	0.0	0.0
TraesCS2B01G372300.1	Wheat	plastid	0.0	0.0
Solyc03g025890.1.1	Tomato	nucleus	0.0	0.0
OQU91528	Sorghum	plastid	0.0	0.0
OQU78247	Sorghum	cytosol	0.0	0.0
CDY50199	Canola	plastid	0.0	0.0
AT4G25540.1	Thale cress	nucleus, plastid	0.0	0.0
CDX92716	Canola	plastid	0.0	0.0
KRH35336	Soybean	cytosol	0.0	0.0
KRG91481	Soybean	plastid	0.0	0.0
HORVU2Hr1G085940.21	Barley	cytosol	0.0	0.0
EES11671	Sorghum	plastid	0.0	0.0
EES11666	Sorghum	plastid	0.0	0.0
EER99643	Sorghum	nucleus	0.0	0.0
EER99382	Sorghum	cytosol	0.0	0.0

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	EntrezGene:8076486	UniProt:C5YAN4	InterPro:Cleav_polyA_spec_factor_su5	EnsemblPlants:EES13125
ProteinID:EES13125	ProteinID:EES13125.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047
EnsemblPlantsGene:SORBI_3006G272200	SUPFAM:SSF55811	unigene:Sbi.17357	UniParc:UPI0001A8762C	RefSeq:XP_002448797.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:60387759..60391985

Molecular Weight (calculated)

23155.4 Da

IEP (calculated)

9.541

GRAVY (calculated)

-0.249

Length

202 amino acids

Sequence
(BLAST)

001: MVSSSSPVVN VYPLANYTFG TKEPKMEKDT SVADRLARMK VNYMKEGMRT SVEAILLVQE HNHPHILLLQ IGNTFCKLPG GRLKPGENEI EGLKRKLCSK
101: LAVNSPSFPP NWQIGECVAV WWRPNFETVM YPYCPPHITK PKECKKLFIV HLSEREYFAV PRNLKLLAVP LFELYDNVQR YGPVISTIPQ QLSRFQFNMV
201: SS

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.