CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020424_P002	Maize	nucleus, plastid	91.64	92.21
HORVU5Hr1G061020.11	Barley	endoplasmic reticulum, golgi, plasma membrane	60.74	76.6
TraesCS5D01G212500.1	Wheat	nucleus	66.41	76.1
TraesCS5A01G206300.1	Wheat	mitochondrion	75.15	74.3
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	39.8	73.0
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	59.2	60.55
VIT_07s0005g01370.t01	Wine grape	plastid	57.13	57.44
KRG96523	Soybean	plastid	54.52	55.85
Solyc01g079520.2.1	Tomato	plastid	54.98	54.65
CDX91808	Canola	mitochondrion, nucleus, plastid	53.83	53.14
AT4G02070.1	Thale cress	plastid	53.76	52.95
CDX90956	Canola	plastid	53.99	52.66
Bra000896.1-P	Field mustard	plastid	53.99	52.66
KXG31683	Sorghum	mitochondrion, nucleus	23.62	25.02
EES11671	Sorghum	plastid	20.4	24.18
EER99382	Sorghum	cytosol	13.5	21.92
OQU78247	Sorghum	cytosol	12.96	21.53
EER99643	Sorghum	nucleus	15.03	20.81
KXG26672	Sorghum	mitochondrion, nucleus	13.34	15.38
EES11666	Sorghum	plastid	9.05	12.94
OQU91528	Sorghum	plastid	7.75	12.15
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.3	Gene3D:2.30.30.140	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
UniProt:A0A1B6QCH6	InterPro:DNA_mismatch_repair_MSH6_C	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N
InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	InterPro:IPR002999	InterPro:IPR016151	InterPro:IPR036678	EnsemblPlants:KXG35601
ProteinID:KXG35601	ProteinID:KXG35601.1	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624
PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF31	SMART:SM00333	SMART:SM00533	SMART:SM00534	EnsemblPlantsGene:SORBI_3002G197300	SUPFAM:SSF48334
SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271	SUPFAM:SSF63748	InterPro:Tudor	UniParc:UPI00081AB4FB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:58662323..58673930

Molecular Weight (calculated)

144523.0 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.445

Length

1304 amino acids

Sequence
(BLAST)

0001: MASRRASNGR SPLVRKQSQI TAFFSSSPTR SPSPSGPSPG ASKPSPSPLN PSARTRSPLA AVSPPPPKLP PPQKQKKGKK DKEDRDAVAA VPAPLAAEVV
0101: GRRLRVYWPL DDAWYKGRVA AYDAASRRHR VKYDDGDEEE VDLGKEKFEW EAAVEDSTPP PARKLRRLRR MSDTSVAKSP AVAEDSAGDS TEDEDWKRDT
0201: VVEDDSEEVE LDEEDEEEVV AVRSRKGKPK NSLLVSGSTP STLSSGLTSE SGSKVSKKRK NVDVASLDFA KRFTFEAVNT TRKVDPEVPM SCGKKGQTTG
0301: NDYTALTGDA AERFGQRDAE KFKFLGEGRK DAKGRRPGSP GFDPKTLLLP PQFLKSLTGA QRQWWEFKSH HMDKVLFFKM GKFYELFEMD AHVGAKDLDL
0401: QYMKGEQPHC GFPEKNLSVN LEKLAEKGYR VLVVEQTETP EQLELRRKEM GIKDKVVRRE ICAVVTKGTL IEGEHLLANP DPSYLLSVTE SHQQSSKKSQ
0501: ETCTIGVCIV DVSTSKFIVG QFQDDPERHG LCSILSEMRP VEIIKPGKML SPETEKALKN NTRKPLINEL LPSTEFWDAA KTIDEIKQYY SSADKQNDAD
0601: DIQDCVNCLP NLLCELIGAG DKTYALSALG GSLFYLRQTL LDDKILPFAE FEPLACSGLI NNIRKNMILD AAALENLELL ENMRTGGLSG TLYAQLNHCV
0701: TGFGKRLLKR WIAKPLYDRS AILRRQSAVA TFKGVGQDYA AQFRKDLSRL PDMERLLARL FSSCDENKRS SSVVVYEDAS KRLLQQFTAA LRGCQQMFHA
0801: CSSISTLICT EGSQLNDLLS PGKGLPDISS ILDRFRDAFD WSEADRNGRI IPCEGCDPEY DATCYAIEEI KSSLKEYLKE QRKLLRPASV NYVDVGKDMY
0901: LIEVPESLGG SVPRNYELQS TKKGFFRYWT PELKELILEL SKAESEKESK LKGILQNLIQ LFVEHHTEWR QLVSVVAELD VLISLAIASG YFEGPSCCPT
1001: IKESNGQEDT PTFHARNLGH PILRSDSLGK GSFVPNDVKI GGSGNPSFIV LTGPNMGGKS TLLRQVCLTI ILAQIGADVP AENLELSLVD RIFVRMGARD
1101: HIMAGQSTFL VELEETASVL SSATKNSLVV LDELGRGTST SDGQAIAASV LEYLVHQVQC LGLFSTHYHR LAMERKDTKV SLCHMACQVV EGEGGLEEVT
1201: FLYRLTPGAC PKSYGVNVAR LAGIPTSVLQ RANEKSSDFE ANYGKRHKMT KDKHVSAQSD DVFSAIRDLF CIVKAWPCRP EDQATSISML REVQKRAKVK
1301: AVES

Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)

0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN

Arabidopsis Description

MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.