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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d022028_P005 Maize nucleus 89.28 94.49
Os05t0274200-01 Rice cytosol 87.47 87.47
TraesCS1D01G131600.3 Wheat nucleus 85.03 85.03
TraesCS1A01G135100.1 Wheat nucleus 85.03 83.52
CDY40145 Canola cytosol, extracellular, plastid 7.43 83.33
TraesCS1B01G149700.3 Wheat nucleus 84.82 82.88
HORVU1Hr1G030930.22 Barley plastid 82.27 77.73
GSMUA_Achr6P13480_001 Banana cytosol 20.7 75.88
Bra028327.1-P Field mustard extracellular, vacuole 12.95 73.94
GSMUA_Achr6P13490_001 Banana cytosol 50.11 71.62
VIT_17s0000g04170.t01 Wine grape cytosol 71.44 71.22
KRH03809 Soybean nucleus 69.53 69.53
Solyc06g069230.2.1 Tomato cytosol 68.68 68.61
PGSC0003DMT400010422 Potato cytosol 68.47 68.4
AT3G18524.1 Thale cress nucleus 64.97 65.31
Bra001709.1-P Field mustard nucleus 64.33 64.67
CDX82340 Canola nucleus 64.33 64.67
CDY52899 Canola nucleus 64.12 64.46
PGSC0003DMT400021697 Potato cytosol, extracellular, nucleus 12.0 56.22
PGSC0003DMT400021699 Potato cytosol 8.49 50.31
EER99382 Sorghum cytosol 17.83 20.92
OQU78247 Sorghum cytosol 16.99 20.38
EES11671 Sorghum plastid 22.72 19.45
KXG35601 Sorghum mitochondrion, nucleus, plastid 20.81 15.03
KXG31683 Sorghum mitochondrion, nucleus 19.43 14.87
KXG26672 Sorghum mitochondrion, nucleus 14.01 11.67
OQU91528 Sorghum plastid 10.08 11.43
EES11666 Sorghum plastid 10.19 10.53
EES13125 Sorghum cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.1420.10MapMan:14.7.1.1Gene3D:3.30.420.110Gene3D:3.40.1170.10Gene3D:3.40.50.300EntrezGene:8060623
UniProt:C5XD67InterPro:DNA_mismatch_repair_Msh2InterPro:DNA_mismatch_repair_MutS-lik_NInterPro:DNA_mismatch_repair_MutS_CInterPro:DNA_mismatch_repair_MutS_NInterPro:DNA_mismatch_repair_MutS_clamp
InterPro:DNA_mismatch_repair_MutS_coreInterPro:DNA_mismatch_repair_MutS_sfInterPro:DNA_mmatch_repair_MutS_con_domEnsemblPlants:EER99643ProteinID:EER99643ProteinID:EER99643.1
GO:GO:0000003GO:GO:0000166GO:GO:0000400GO:GO:0000403GO:GO:0000404GO:GO:0000406
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0003824GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005886
GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006290GO:GO:0006298GO:GO:0006301
GO:GO:0006311GO:GO:0006950GO:GO:0006974GO:GO:0007049GO:GO:0008094GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0016787GO:GO:0030983
GO:GO:0032137GO:GO:0032138GO:GO:0032300GO:GO:0032301GO:GO:0032302GO:GO:0043570
GO:GO:0045128InterPro:IPR016151InterPro:IPR036678InterPro:Msh2InterPro:MutS_con_dom_sfInterPro:P-loop_NTPase
PFAM:PF00488PFAM:PF01624PFAM:PF05188PFAM:PF05190PFAM:PF05192PIRSF:PIRSF005813
ScanProsite:PS00486PANTHER:PTHR11361PANTHER:PTHR11361:SF35SMART:SM00533SMART:SM00534EnsemblPlantsGene:SORBI_3002G362200
SUPFAM:SSF48334SUPFAM:SSF52540UniParc:UPI0001A83C9ERefSeq:XP_002463122.1SEG:seg:
Description
hypothetical protein
Coordinates
chr2:-:72341324..72351213
Molecular Weight (calculated)
105297.0 Da
IEP (calculated)
5.544
GRAVY (calculated)
-0.249
Length
942 amino acids
Sequence
(BLAST)
001: MEGDDFTPEG GKLPEFKLDA RQAQGFISFF KRLPQDPRAV RLFDRRDYYT AHGENATFIA RTYYHTMSAL RQLGSSSDGI SSVSVSKAMF ETIARNILLE
101: RTDCTLELYE GSGSNWRLTK SGTPGNIGSF EDLLFANNDM QDSPVIVALF PVCRESQLYV GLSFLDMTNR KLGLAEFPED SRFTNVESAL VALGCKECLL
201: SEDCEKSIDL NPLRDAISNC NVLLTVKKKA DFKSRDLAQD LGRIIRGSVE PVRDLLSQFD YALGPLGALL SYAELLADDT NYGNYTIEKY NLNCYMRLDS
301: AAVRALNISE RKTDVNKNFS LFGLMNRTCT VGMGKRLLNR WLKQPLLDVN EINNRLDMVQ AFVEDPELRQ GLRQQLKRIS DIDRLTHALR KKSATLQPVV
401: KLYQSCCRIS YIKGILEQYN GQFSTLIRSK FLEPLEEWMA EDRFGRFSSL VETTIDLGQL ENGEYRISPL YSSDLGVLKD ELSVVENHIN NLHVDTASDL
501: DLSVDKQLKL EKGPLGHVFR MSKKEEQKVR KKLTGSYLII ETRKDGVKFT SSKLKKLSDQ YQALFAEYTS CQKKVVGDVV RVSGSYSEVF ENFAAVLSEL
601: DVLQSFADLA TSCPVPYVRP DITVSDEGDI VLLGSRHPCL EAQDGVNFIP NDCTLVRGKS WFQIITGPNM GGKSTFIRQV GVNVLMAQVG SFVPCDQASV
701: SVRDCIFARV GAGDCQLHGV STFMQEMLET ASILKGASDK SLIIIDELGR GTSTYDGFGL AWAICEHLME VTRAPTLFAT HFHELTALAH KNDDEHQRVS
801: NIGIANYHVG AHIDPSSRKL TMLYKVEPGA CDQSFGIHVA EFANFPEAVV ALAKSKAAEL EDFSTTPTFS DDSKDEVGSK RKRVFSPDDV TRGAARARLF
901: LEDFAALPVD EMDRSKIVEM VTKMKSDLQK DAADNPWLQQ FF
Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Arabidopsis Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.